View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12947_low_2 (Length: 571)
Name: NF12947_low_2
Description: NF12947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12947_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 9 - 331
Target Start/End: Complemental strand, 44893177 - 44892855
Alignment:
| Q |
9 |
agcagagagaatacagtataattgaaacatactttttagtttagattcaacattcaaccgtgaaacaattactcccatatagtagtgggataaaagtgaa |
108 |
Q |
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| T |
44893177 |
agcagagagaatacagtataattgaaacatactttttagtttagattcaacattcaaccgtgaaacaattactcccatatagtagtgggataaaagtgaa |
44893078 |
T |
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| Q |
109 |
agaccgtctttgttcccgtcctttttgatcttcaataattaatgtttatctttctagaaattctccttgtgaaaatcaaatttgggggctctctcctgag |
208 |
Q |
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| T |
44893077 |
agaccgtctttgttcccgtcctttttgatcttcaataattaatgtttatctttctagaaattctccttgtgaaaatcaaatttgggggctctctcctgag |
44892978 |
T |
|
| Q |
209 |
aaaattccaaagctaacccacgaagttctttaataggtgccggtgctccacagtaaaacactcctgcatattgaaataggttcagatcttcaataacgat |
308 |
Q |
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| T |
44892977 |
aaaattccaaagctaacccacgaagttctttaataggtgccggtgctccacagtaaaacactcctgcatattgaaataggttcagatcttcaataacgat |
44892878 |
T |
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| Q |
309 |
ttcagtgcattcaatgaatactc |
331 |
Q |
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| T |
44892877 |
ttcagtgcattcaatgaatactc |
44892855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 363 - 556
Target Start/End: Complemental strand, 44892832 - 44892639
Alignment:
| Q |
363 |
cgtagcacaataagttgacgaaatcacaatggtacagtgataatggaaactctaaaatgttgactttgttatgtcaaatgagcacgaagaataggaactc |
462 |
Q |
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| T |
44892832 |
cgtagcacaataagttgacgaaatcacaatggtacagtgataatggaaactctaaaatgttgactttgttatgtcaaatgagcacgaagaataggaactc |
44892733 |
T |
|
| Q |
463 |
accaatgcgtttttgtggatgattttttgcaatcctattgtagacactgcgccaattgggtcgtgcaaagtaagacgcgatgggtgttccattt |
556 |
Q |
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| T |
44892732 |
accaatgcgtttttgtggatgattatttgcaatcctattgtagacactgcgccaattgggtcgtgcaaagtaagacgcgatgggtgttccattt |
44892639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 453 - 553
Target Start/End: Complemental strand, 44901395 - 44901295
Alignment:
| Q |
453 |
ataggaactcaccaatgcgtttttgtggatgattttttgcaatcctattgtagacactgcgccaattgggtcgtgcaaagtaagacgcgatgggtgttcc |
552 |
Q |
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| T |
44901395 |
ataggaactcaccaatgcgtttttgtggatgattaagtgcaatgcgcttgtagacgctgcaccattttggtctagcaaagtgagacttgacgggtgttcc |
44901296 |
T |
|
| Q |
553 |
a |
553 |
Q |
| |
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| |
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|
| T |
44901295 |
a |
44901295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 277
Target Start/End: Complemental strand, 44918533 - 44918418
Alignment:
| Q |
162 |
ctagaaattctccttgtgaaaatcaaatttgggggctctctcctgagaaaattccaaagctaacccacgaagttctttaataggtgccggtgctccacag |
261 |
Q |
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|||||||||||||||||| |||||| |||||| || | | | |||||||| ||| || |||| |||||| |||||| || |||| |||| |||||| |
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| T |
44918533 |
ctagaaattctccttgtggaaatcatatttggtggttgtgttgtgagaaaagtccgaacctaattgacgaagctctttagtaagtgcaggtggcccacag |
44918434 |
T |
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| Q |
262 |
taaaacactcctgcat |
277 |
Q |
| |
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|||||||| ||||||| |
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| T |
44918433 |
taaaacacccctgcat |
44918418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 44902044 - 44901980
Alignment:
| Q |
127 |
tcctttttgatcttcaataattaatgtttatctttctagaaattctccttgtgaaaatcaaatttgg |
193 |
Q |
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||||||||| ||||||| ||| ||||| |||| ||||||||||||||||||| ||||||||||||| |
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| T |
44902044 |
tcctttttg-tcttcaacaat-aatgtccatctgtctagaaattctccttgtggaaatcaaatttgg |
44901980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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