View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12947_low_22 (Length: 244)

Name: NF12947_low_22
Description: NF12947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12947_low_22
NF12947_low_22
[»] scaffold0236 (1 HSPs)
scaffold0236 (20-227)||(23121-23328)
[»] chr1 (24 HSPs)
chr1 (69-227)||(25274400-25274558)
chr1 (20-55)||(1712375-1712410)
chr1 (20-55)||(26811458-26811493)
chr1 (20-66)||(15911976-15912022)
chr1 (21-66)||(46038894-46038939)
chr1 (20-55)||(7159512-7159547)
chr1 (20-55)||(7764454-7764489)
chr1 (20-55)||(15911677-15911712)
chr1 (20-55)||(27855568-27855603)
chr1 (20-55)||(42406888-42406923)
chr1 (20-66)||(6491689-6491735)
chr1 (20-66)||(13344449-13344495)
chr1 (20-66)||(13791848-13791894)
chr1 (20-66)||(26932886-26932932)
chr1 (17-55)||(43914850-43914888)
chr1 (20-66)||(52149787-52149833)
chr1 (18-55)||(21697145-21697181)
chr1 (21-66)||(28503410-28503455)
chr1 (20-65)||(52143160-52143205)
chr1 (20-60)||(6912454-6912494)
chr1 (19-55)||(7489514-7489550)
chr1 (20-55)||(9053675-9053711)
chr1 (20-60)||(36139366-36139406)
chr1 (20-60)||(40355848-40355888)
[»] chr8 (23 HSPs)
chr8 (18-55)||(7658607-7658644)
chr8 (20-55)||(44807348-44807383)
chr8 (18-55)||(26919987-26920024)
chr8 (20-55)||(17075027-17075062)
chr8 (20-55)||(17573208-17573243)
chr8 (20-55)||(18530837-18530872)
chr8 (20-55)||(23623426-23623461)
chr8 (20-55)||(31947859-31947894)
chr8 (20-55)||(32498383-32498418)
chr8 (20-55)||(33687760-33687795)
chr8 (17-55)||(33877766-33877805)
chr8 (20-55)||(41206405-41206440)
chr8 (17-55)||(1657393-1657431)
chr8 (20-66)||(4107121-4107167)
chr8 (17-55)||(14032303-14032341)
chr8 (17-55)||(42267461-42267499)
chr8 (20-66)||(44886177-44886223)
chr8 (20-65)||(28595925-28595970)
chr8 (20-64)||(6641871-6641915)
chr8 (20-64)||(23233777-23233821)
chr8 (20-60)||(37953646-37953686)
chr8 (20-60)||(41015064-41015104)
chr8 (20-60)||(45106708-45106748)
[»] chr2 (26 HSPs)
chr2 (18-55)||(40938799-40938836)
chr2 (20-55)||(11188311-11188346)
chr2 (20-55)||(21024734-21024769)
chr2 (18-55)||(12542144-12542181)
chr2 (17-65)||(1380998-1381046)
chr2 (20-55)||(2755223-2755258)
chr2 (20-55)||(10741351-10741386)
chr2 (20-55)||(31025880-31025915)
chr2 (20-55)||(32661409-32661444)
chr2 (20-55)||(34470034-34470069)
chr2 (20-55)||(34922229-34922264)
chr2 (20-55)||(39374403-39374438)
chr2 (20-55)||(41454517-41454552)
chr2 (17-55)||(1467078-1467116)
chr2 (17-55)||(7463952-7463990)
chr2 (20-62)||(8519264-8519306)
chr2 (17-55)||(15977479-15977517)
chr2 (20-66)||(16865313-16865359)
chr2 (17-55)||(21552546-21552584)
chr2 (20-65)||(39642724-39642769)
chr2 (20-60)||(11134016-11134056)
chr2 (20-60)||(11362561-11362601)
chr2 (21-53)||(11364587-11364619)
chr2 (20-60)||(16238496-16238536)
chr2 (20-64)||(22194721-22194765)
chr2 (17-65)||(22699451-22699499)
[»] scaffold2010 (1 HSPs)
scaffold2010 (20-55)||(498-533)
[»] chr6 (17 HSPs)
chr6 (20-67)||(6324195-6324242)
chr6 (20-55)||(32591876-32591911)
chr6 (20-66)||(3535052-3535098)
chr6 (18-55)||(11109005-11109042)
chr6 (20-55)||(4037043-4037078)
chr6 (20-55)||(8160604-8160639)
chr6 (20-55)||(24897096-24897131)
chr6 (20-55)||(31175839-31175874)
chr6 (17-55)||(2100651-2100689)
chr6 (18-60)||(9381736-9381778)
chr6 (20-66)||(28930737-28930783)
chr6 (17-55)||(31740774-31740812)
chr6 (21-55)||(33274237-33274271)
chr6 (20-64)||(1814972-1815016)
chr6 (20-60)||(9703817-9703857)
chr6 (20-64)||(10977654-10977698)
chr6 (20-60)||(15273252-15273292)
[»] chr5 (21 HSPs)
chr5 (20-55)||(10331961-10331996)
chr5 (20-55)||(37887677-37887712)
chr5 (20-60)||(7623793-7623833)
chr5 (20-55)||(2546645-2546680)
chr5 (20-55)||(6815505-6815540)
chr5 (20-55)||(16597313-16597348)
chr5 (20-66)||(8755007-8755053)
chr5 (18-64)||(12610545-12610591)
chr5 (17-55)||(25631091-25631129)
chr5 (20-66)||(26323648-26323694)
chr5 (17-55)||(42739532-42739570)
chr5 (20-65)||(1055366-1055411)
chr5 (18-55)||(4146409-4146446)
chr5 (20-73)||(28736427-28736480)
chr5 (22-55)||(33749252-33749285)
chr5 (17-61)||(8755283-8755327)
chr5 (20-60)||(10169015-10169055)
chr5 (20-60)||(14514957-14514997)
chr5 (20-64)||(25693897-25693941)
chr5 (20-60)||(26151794-26151834)
chr5 (20-64)||(28703922-28703966)
[»] chr3 (16 HSPs)
chr3 (19-66)||(30632396-30632443)
chr3 (17-64)||(41722254-41722301)
chr3 (17-66)||(2205531-2205580)
chr3 (18-55)||(54716481-54716518)
chr3 (20-60)||(47284565-47284605)
chr3 (20-55)||(30761073-30761108)
chr3 (20-55)||(46934044-46934079)
chr3 (17-55)||(17483566-17483604)
chr3 (17-55)||(44177555-44177593)
chr3 (20-66)||(45760506-45760552)
chr3 (20-66)||(51213301-51213347)
chr3 (20-65)||(2118987-2119032)
chr3 (20-65)||(41282120-41282165)
chr3 (20-60)||(9792921-9792961)
chr3 (20-60)||(47722149-47722189)
chr3 (20-60)||(53568598-53568638)
[»] chr7 (20 HSPs)
chr7 (18-60)||(36801872-36801914)
chr7 (20-64)||(35711931-35711975)
chr7 (20-60)||(36204455-36204495)
chr7 (20-55)||(4060993-4061028)
chr7 (20-55)||(8409098-8409133)
chr7 (20-55)||(11742931-11742966)
chr7 (20-55)||(21954348-21954383)
chr7 (18-61)||(38974409-38974452)
chr7 (20-55)||(45480102-45480137)
chr7 (17-55)||(5097055-5097093)
chr7 (20-66)||(10319166-10319212)
chr7 (20-65)||(3235109-3235154)
chr7 (18-55)||(29673721-29673758)
chr7 (20-65)||(30699297-30699342)
chr7 (20-65)||(38445679-38445724)
chr7 (18-55)||(39142461-39142498)
chr7 (20-60)||(228231-228271)
chr7 (20-60)||(19778274-19778314)
chr7 (20-60)||(21202875-21202915)
chr7 (19-55)||(37858325-37858360)
[»] chr4 (24 HSPs)
chr4 (18-67)||(3556185-3556234)
chr4 (20-60)||(13306926-13306966)
chr4 (20-55)||(1186961-1186996)
chr4 (20-55)||(2016260-2016295)
chr4 (20-55)||(9592404-9592439)
chr4 (20-55)||(12892829-12892864)
chr4 (20-55)||(24296773-24296808)
chr4 (20-55)||(29860657-29860692)
chr4 (20-55)||(36945518-36945553)
chr4 (21-60)||(44120756-44120795)
chr4 (20-55)||(45904217-45904252)
chr4 (20-55)||(46282765-46282800)
chr4 (20-55)||(49869692-49869727)
chr4 (24-55)||(51239990-51240021)
chr4 (17-55)||(13019278-13019316)
chr4 (17-55)||(14578710-14578748)
chr4 (20-66)||(34363091-34363137)
chr4 (17-55)||(38371276-38371314)
chr4 (17-55)||(50996040-50996078)
chr4 (21-55)||(51843565-51843599)
chr4 (17-66)||(7666468-7666517)
chr4 (20-65)||(20472544-20472589)
chr4 (20-61)||(24543016-24543057)
chr4 (20-60)||(34625242-34625282)
[»] scaffold0283 (1 HSPs)
scaffold0283 (20-66)||(1178-1224)
[»] scaffold0035 (1 HSPs)
scaffold0035 (17-55)||(81310-81348)
[»] scaffold0016 (1 HSPs)
scaffold0016 (20-66)||(75348-75394)
[»] scaffold0005 (1 HSPs)
scaffold0005 (17-55)||(238627-238665)
[»] scaffold0951 (1 HSPs)
scaffold0951 (20-65)||(3700-3745)
[»] scaffold0032 (1 HSPs)
scaffold0032 (20-53)||(47811-47844)


Alignment Details
Target: scaffold0236 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 23121 - 23328
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaatcaatatggctattcaaattcaatgtgaataatgatcatttactattaagaat 119  Q
    |||||||||||||||||| ||  ||||||||||||| | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23121 caacttttgaaaagatagaggaccaaaagtgcaattaagccaaaaaaccaatatggctattcaaattcaatgtgaatcatgatcatttactattaagaat 23220  T
Q  120 ttatgcagtataacaatatgtcttaagttcaatatatgtatcaaccacacaatttttgagacttcatcatctttatctccacaaagccattaatccttac 219  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23221 ttatgcagtataacaatatatcttaagttcaatatatgtatcaaccacacaatttttgagacttcatcatctttatctccacaaagccattaatccttac 23320  T
Q  220 ttaactct 227  Q
    ||||||||    
T  23321 ttaactct 23328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 69 - 227
Target Start/End: Complemental strand, 25274558 - 25274400
Alignment:
Q  69 aatatggctattcaaattcaatgtgaataatgatcatttactattaagaatttatgcagtataacaatatgtcttaagttcaatatatgtatcaaccaca 168  Q
    ||||||||||||||| |||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||| |||||||||| ||| ||||||||||    
T  25274558 aatatggctattcaatttcaatgtgaatcatgatcatttcctattaagaatttttgcagtataacaatatgtctgaagttcaataaatgcatcaaccaca 25274459  T
Q  169 caatttttgagacttcatcatctttatctccacaaagccattaatccttacttaactct 227  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25274458 caattttttagacttaatcatctttatctccacaaagccattaatccttacttaactct 25274400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 1712410 - 1712375
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||||||||||||||    
T  1712410 caacttttgaaaagatagggggtcaaaagtgcaatt 1712375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 26811493 - 26811458
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||||||||||||||    
T  26811493 caacttttgaaaagatagggggtcaaaagtgcaatt 26811458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 15911976 - 15912022
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    ||||||||||||| |||||||||||||||||||||| | ||||||||    
T  15911976 caacttttgaaaaaatagggggtcaaaagtgcaattaagccaaaaaa 15912022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 46038939 - 46038894
Alignment:
Q  21 aacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    ||||||||||||||||||||| ||||||||||||| |||| |||||    
T  46038939 aacttttgaaaagatagggggccaaaagtgcaattaaacctaaaaa 46038894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 7159547 - 7159512
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||| ||||||||||||||||||||||||||    
T  7159547 caacttttggaaagatagggggtcaaaagtgcaatt 7159512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 7764454 - 7764489
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  7764454 caacttttgaaaagatagggggccaaaagtgcaatt 7764489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 15911712 - 15911677
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  15911712 caacttttgaaaagatagggggccaaaagtgcaatt 15911677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 27855603 - 27855568
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||| ||||||||||||||    
T  27855603 caacttttgaaaagataggggttcaaaagtgcaatt 27855568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 42406923 - 42406888
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||| ||||||||||||||    
T  42406923 caacttttgaaaagataggggttcaaaagtgcaatt 42406888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 6491689 - 6491735
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||||    
T  6491689 caacttttgaaaagataggggtccaaaagtgcaattaagccaaaaaa 6491735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 13344449 - 13344495
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    ||||||||||||| |||||||| ||||||||||||| |||| |||||    
T  13344449 caacttttgaaaaaatagggggccaaaagtgcaattaaacctaaaaa 13344495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 13791848 - 13791894
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||||    
T  13791848 caacttttgaaaagataggggtccaaaagtgcaattaagccaaaaaa 13791894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 26932886 - 26932932
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    ||||||||| |||||||||||| ||||||||||||| ||| ||||||    
T  26932886 caacttttggaaagatagggggccaaaagtgcaattaaacaaaaaaa 26932932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 43914850 - 43914888
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  43914850 ccacaacttttgaaaagataggggtccaaaagtgcaatt 43914888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 52149787 - 52149833
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||||    
T  52149787 caacttttgaaaagataggggtccaaaagtgcaattaagccaaaaaa 52149833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 21697145 - 21697181
Alignment:
Q  18 cacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  21697145 cacaacttttgaaaagata-ggggtcaaaagtgcaatt 21697181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 28503410 - 28503455
Alignment:
Q  21 aacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    ||||||||||||||||||||  ||||||||||||| | ||||||||    
T  28503410 aacttttgaaaagataggggtccaaaagtgcaattaagccaaaaaa 28503455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 52143205 - 52143160
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaa 65  Q
    ||||||||| |||||||||||  ||||||||||||| |||||||||    
T  52143205 caacttttggaaagataggggtccaaaagtgcaattaaaccaaaaa 52143160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 6912454 - 6912494
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    |||||||| ||||||||||||| ||||||||||||| ||||    
T  6912454 caacttttcaaaagatagggggccaaaagtgcaattaaacc 6912494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 7489550 - 7489514
Alignment:
Q  19 acaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||| |||||||||||| |||||||||||||    
T  7489550 acaacttttggaaagatagggggccaaaagtgcaatt 7489514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 9053675 - 9053711
Alignment:
Q  20 caacttttgaaaagatagggggt-caaaagtgcaatt 55  Q
    ||||||||||||||||||||||| |||||||||||||    
T  9053675 caacttttgaaaagatagggggtccaaaagtgcaatt 9053711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 36139406 - 36139366
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    ||||||||| ||||||||||| |||||||||||||| ||||    
T  36139406 caacttttggaaagataggggttcaaaagtgcaattaaacc 36139366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 40355888 - 40355848
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    |||||||||||||||||||||  ||||||||||||| ||||    
T  40355888 caacttttgaaaagataggggtccaaaagtgcaattaaacc 40355848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 7658644 - 7658607
Alignment:
Q  18 cacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7658644 cacaacttttgaaaagatagggggtcaaaagtgcaatt 7658607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 44807348 - 44807383
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||||||||||||||    
T  44807348 caacttttgaaaagatagggggtcaaaagtgcaatt 44807383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 26919987 - 26920024
Alignment:
Q  18 cacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||||| |||||||||||||    
T  26919987 cacaacttttgaaaagatagggggccaaaagtgcaatt 26920024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 17075027 - 17075062
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||| |||||||||||||||||||||||||||    
T  17075027 caacttttaaaaagatagggggtcaaaagtgcaatt 17075062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 17573243 - 17573208
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||| |||||||||||||||||||||||||||    
T  17573243 caacttttaaaaagatagggggtcaaaagtgcaatt 17573208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 18530872 - 18530837
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||| ||||||||||||||    
T  18530872 caacttttgaaaagataggggttcaaaagtgcaatt 18530837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 23623461 - 23623426
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||| ||||||||||||||||||    
T  23623461 caacttttgaaaagatatggggtcaaaagtgcaatt 23623426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 31947894 - 31947859
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  31947894 caacttttgaaaagatagggggccaaaagtgcaatt 31947859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 32498418 - 32498383
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  32498418 caacttttgaaaagatagggggccaaaagtgcaatt 32498383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 33687760 - 33687795
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||| ||||||||||||||||||    
T  33687760 caacttttgaaaagataaggggtcaaaagtgcaatt 33687795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 33877766 - 33877805
Alignment:
Q  17 ccacaacttttgaaaagatagggggt-caaaagtgcaatt 55  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  33877766 ccacaacttttgaaaagatagggggtccaaaagtgcaatt 33877805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 41206405 - 41206440
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||| ||||||||||||||    
T  41206405 caacttttgaaaagataggggttcaaaagtgcaatt 41206440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 1657431 - 1657393
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  1657431 ccacaacttttggaaagataggggttcaaaagtgcaatt 1657393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 4107121 - 4107167
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||||    
T  4107121 caacttttgaaaagataggggtccaaaagtgcaattaagccaaaaaa 4107167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 14032303 - 14032341
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  14032303 ccacaacttttggaaagataggggttcaaaagtgcaatt 14032341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 42267499 - 42267461
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  42267499 ccacaacttttgaaaagataggggtccaaaagtgcaatt 42267461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 44886177 - 44886223
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    |||||||||||||||||||||  ||||||||||||| |||| |||||    
T  44886177 caacttttgaaaagataggggtccaaaagtgcaattaaacctaaaaa 44886223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 28595970 - 28595925
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaa 65  Q
    |||||||||||||||||| || |||||||||||||| |||| ||||    
T  28595970 caacttttgaaaagatagaggttcaaaagtgcaattaaacctaaaa 28595925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 6641871 - 6641915
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaa 64  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||    
T  6641871 caacttttgaaaagataggggtccaaaagtgcaattaagccaaaa 6641915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 23233821 - 23233777
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaa 64  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||    
T  23233821 caacttttgaaaagataggggtccaaaagtgcaattaagccaaaa 23233777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 37953646 - 37953686
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    |||||||||||||||||||||  ||||||||||||| ||||    
T  37953646 caacttttgaaaagataggggtccaaaagtgcaattaaacc 37953686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 41015064 - 41015104
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    |||||||||||||||||||||  ||||||||||||| ||||    
T  41015064 caacttttgaaaagataggggtccaaaagtgcaattaaacc 41015104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 45106708 - 45106748
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    |||||||| |||||||||||| |||||||||||||| ||||    
T  45106708 caacttttaaaaagataggggttcaaaagtgcaattaaacc 45106748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 40938836 - 40938799
Alignment:
Q  18 cacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40938836 cacaacttttgaaaagatagggggtcaaaagtgcaatt 40938799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 11188346 - 11188311
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||||||||||||||    
T  11188346 caacttttgaaaagatagggggtcaaaagtgcaatt 11188311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 21024734 - 21024769
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||||||||||||||    
T  21024734 caacttttgaaaagatagggggtcaaaagtgcaatt 21024769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 12542181 - 12542144
Alignment:
Q  18 cacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||||| |||||||||||||    
T  12542181 cacaacttttgaaaagatagggggccaaaagtgcaatt 12542144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 1380998 - 1381046
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaa 65  Q
    ||||||||||||||||||||||| | ||||| ||||||| |||||||||    
T  1380998 ccacaacttttgaaaagatagggagccaaaaatgcaattaaaccaaaaa 1381046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 2755223 - 2755258
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  2755223 caacttttgaaaagatagggggccaaaagtgcaatt 2755258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 10741351 - 10741386
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  10741351 caacttttgaaaagatagggggccaaaagtgcaatt 10741386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 31025915 - 31025880
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  31025915 caacttttgaaaagatagggggccaaaagtgcaatt 31025880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 32661444 - 32661409
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  32661444 caacttttgaaaagatagggggccaaaagtgcaatt 32661409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 34470069 - 34470034
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  34470069 caacttttgaaaagatagggggccaaaagtgcaatt 34470034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 34922264 - 34922229
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  34922264 caacttttgaaaagatagggggccaaaagtgcaatt 34922229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 39374403 - 39374438
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  39374403 caacttttgaaaatatagggggtcaaaagtgcaatt 39374438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 41454552 - 41454517
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  41454552 caacttttgaaaagatagggggccaaaagtgcaatt 41454517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 1467078 - 1467116
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  1467078 ccacaacttttgaaaagataggggtccaaaagtgcaatt 1467116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 7463990 - 7463952
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  7463990 ccacaacttttaaaaagataggggttcaaaagtgcaatt 7463952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 8519306 - 8519264
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaa 62  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||    
T  8519306 caacttttggaaagataggggttcaaaagtgcaattaaaccaa 8519264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 15977479 - 15977517
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  15977479 ccacaacttttgaaaagataggggtccaaaagtgcaatt 15977517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 16865359 - 16865313
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    ||||||||| |||||||||||| ||||||||||||| | ||||||||    
T  16865359 caacttttggaaagatagggggccaaaagtgcaattaagccaaaaaa 16865313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 21552584 - 21552546
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  21552584 ccacaacttttgaaaagataggggtccaaaagtgcaatt 21552546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 39642769 - 39642724
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaa 65  Q
    |||||||||||||||||||||  ||||||||||||| | |||||||    
T  39642769 caacttttgaaaagataggggtccaaaagtgcaattaagccaaaaa 39642724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 11134016 - 11134056
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    |||||||||||||||||||||  ||||||||||||| ||||    
T  11134016 caacttttgaaaagataggggaccaaaagtgcaattaaacc 11134056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 11362601 - 11362561
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    |||||||||||||||||||||  ||||||||||||| ||||    
T  11362601 caacttttgaaaagataggggtccaaaagtgcaattaaacc 11362561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 11364587 - 11364619
Alignment:
Q  21 aacttttgaaaagatagggggtcaaaagtgcaa 53  Q
    ||||||||||||||||||||| |||||||||||    
T  11364587 aacttttgaaaagatagggggacaaaagtgcaa 11364619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 16238496 - 16238536
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    ||||||||||||||||||||| |||||| ||||||| ||||    
T  16238496 caacttttgaaaagataggggatcaaaaatgcaattaaacc 16238536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 22194721 - 22194765
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaa 64  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||    
T  22194721 caacttttgaaaagataggggtccaaaagtgcaattaagccaaaa 22194765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 22699499 - 22699451
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaa 65  Q
    ||||||||||||||||||||||||  ||||||| ||||| | |||||||    
T  22699499 ccacaacttttgaaaagataggggtccaaaagtacaattaagccaaaaa 22699451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2010 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold2010
Description:

Target: scaffold2010; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 533 - 498
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||||||||||||||    
T  533 caacttttgaaaagatagggggtcaaaagtgcaatt 498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 6324242 - 6324195
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaat 67  Q
    |||||||||||||||||||||| ||||||||||||| | |||||||||    
T  6324242 caacttttgaaaagatagggggccaaaagtgcaattaagccaaaaaat 6324195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 32591876 - 32591911
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||||||||||||||    
T  32591876 caacttttgaaaagatagggggtcaaaagtgcaatt 32591911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 3535052 - 3535098
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    |||||||||||||||||||||  ||||||||||||| ||||||||||    
T  3535052 caacttttgaaaagataggggtccaaaagtgcaattaaaccaaaaaa 3535098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 11109005 - 11109042
Alignment:
Q  18 cacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  11109005 cacaacttttgaaaagataaggggtcaaaagtgcaatt 11109042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 4037078 - 4037043
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  4037078 caacttttgaaaagatagggggccaaaagtgcaatt 4037043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 8160639 - 8160604
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||| ||||||||||||||    
T  8160639 caacttttgaaaagataggggatcaaaagtgcaatt 8160604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 24897131 - 24897096
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||| ||||||||||||||||    
T  24897131 caacttttgaaaagataggaggtcaaaagtgcaatt 24897096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 31175839 - 31175874
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31175839 caacttttgaaaagatagggggttaaaagtgcaatt 31175874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 2100651 - 2100689
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  2100651 ccacaacttttgaaaagataggggtccaaaagtgcaatt 2100689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 9381736 - 9381778
Alignment:
Q  18 cacaacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||    
T  9381736 cacaacttttggaaatatagggggtcaaaagtgcaattaaacc 9381778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 28930737 - 28930783
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||||    
T  28930737 caacttttgaaaagataggggtccaaaagtgcaattaagccaaaaaa 28930783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 31740812 - 31740774
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  31740812 ccacaacttttgaaaagataggggtccaaaagtgcaatt 31740774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 33274271 - 33274237
Alignment:
Q  21 aacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||| |||||||||||||    
T  33274271 aacttttgaaaagatagggggccaaaagtgcaatt 33274237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 1815016 - 1814972
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaa 64  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||    
T  1815016 caacttttgaaaagataggggtccaaaagtgcaattaagccaaaa 1814972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 9703817 - 9703857
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    |||||||||||||||||||||  ||||||||||||| ||||    
T  9703817 caacttttgaaaagataggggtccaaaagtgcaattaaacc 9703857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 10977698 - 10977654
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaa 64  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||    
T  10977698 caacttttgaaaagataggggtccaaaagtgcaattaagccaaaa 10977654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 15273252 - 15273292
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    |||||||||||||||||||||  ||||||||||||| ||||    
T  15273252 caacttttgaaaagataggggtccaaaagtgcaattaaacc 15273292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 10331996 - 10331961
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||||||||||||||    
T  10331996 caacttttgaaaagatagggggtcaaaagtgcaatt 10331961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 37887712 - 37887677
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||||||||||||||    
T  37887712 caacttttgaaaagatagggggtcaaaagtgcaatt 37887677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 7623793 - 7623833
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    ||||||||||||||||||||| |||||||||||||| ||||    
T  7623793 caacttttgaaaagataggggttcaaaagtgcaattaaacc 7623833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 2546645 - 2546680
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||| ||||||||||||||    
T  2546645 caacttttgaaaagataggggttcaaaagtgcaatt 2546680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 6815540 - 6815505
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  6815540 caacttttgaaaagatagggggccaaaagtgcaatt 6815505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 16597313 - 16597348
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||| ||||||||||||||    
T  16597313 caacttttgaaaagataggggttcaaaagtgcaatt 16597348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 8755053 - 8755007
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    ||||||||||||| |||||||  ||||||||||||| ||||||||||    
T  8755053 caacttttgaaaaaataggggtccaaaagtgcaattaaaccaaaaaa 8755007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 12610545 - 12610591
Alignment:
Q  18 cacaacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaa 64  Q
    |||||||||||||||||||| ||| ||||||||||||| | ||||||    
T  12610545 cacaacttttgaaaagatagagggccaaaagtgcaattaagccaaaa 12610591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 25631129 - 25631091
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  25631129 ccacaacttttgaaaagataggggtccaaaagtgcaatt 25631091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 26323648 - 26323694
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||||    
T  26323648 caacttttgaaaagataggggtccaaaagtgcaattaagccaaaaaa 26323694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 42739570 - 42739532
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  42739570 ccacaacttttgaaaagataggggttcaaaagtacaatt 42739532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 1055411 - 1055366
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaa 65  Q
    |||||||||||||||||||||  ||||||||||||| |||| ||||    
T  1055411 caacttttgaaaagataggggtccaaaagtgcaattaaacctaaaa 1055366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 4146409 - 4146446
Alignment:
Q  18 cacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  4146409 cacaacttttggaaagatagggggccaaaagtgcaatt 4146446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 28736480 - 28736427
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaatcaatat 73  Q
    ||||||||| ||| |||||||  ||||||||||||| ||||||||||| |||||    
T  28736480 caacttttggaaaaataggggtccaaaagtgcaattaaaccaaaaaataaatat 28736427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 33749285 - 33749252
Alignment:
Q  22 acttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||| |||||||||||||    
T  33749285 acttttgaaaagatagggggccaaaagtgcaatt 33749252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 8755283 - 8755327
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaattcaacca 61  Q
    |||||||||||||||| |||||||  ||||||||||||| |||||    
T  8755283 ccacaacttttgaaaaaataggggtccaaaagtgcaattaaacca 8755327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 10169055 - 10169015
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    |||||||| ||||||||||||| ||||||||||||| ||||    
T  10169055 caacttttaaaaagatagggggccaaaagtgcaattaaacc 10169015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 14514957 - 14514997
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    ||||||||| |||||||||||| ||||||||||||| ||||    
T  14514957 caacttttggaaagatagggggccaaaagtgcaattaaacc 14514997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 25693941 - 25693897
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaa 64  Q
    |||||||||||||||||||||| ||||||| ||||| | ||||||    
T  25693941 caacttttgaaaagatagggggccaaaagtacaattaagccaaaa 25693897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 26151834 - 26151794
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    |||||||||||||||||||||  ||||||||||||| ||||    
T  26151834 caacttttgaaaagataggggtccaaaagtgcaattaaacc 26151794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 28703922 - 28703966
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaa 64  Q
    ||||||||| |||||||||||  ||||||||||||||| ||||||    
T  28703922 caacttttggaaagataggggtccaaaagtgcaattcagccaaaa 28703966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 30632396 - 30632443
Alignment:
Q  19 acaacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    |||||||||||||||||||||| |||||||||||||| |||| |||||    
T  30632396 acaacttttgaaaagataggggatcaaaagtgcaattaaacctaaaaa 30632443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 41722254 - 41722301
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaa 64  Q
    |||||||||||||||||||||||| |||||||||||||| | ||||||    
T  41722254 ccacaacttttgaaaagataggggttcaaaagtgcaattaagccaaaa 41722301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 2205580 - 2205531
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    |||||||||||| ||||||||||| |||||||||||||| |||| |||||    
T  2205580 ccacaacttttggaaagataggggttcaaaagtgcaattaaacctaaaaa 2205531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 54716518 - 54716481
Alignment:
Q  18 cacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||||| |||||||||||||    
T  54716518 cacaacttttgaaaagatagggggccaaaagtgcaatt 54716481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 47284565 - 47284605
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  47284565 caacttttaaaaagatagggggtcaaaagtgcaattaaacc 47284605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 30761073 - 30761108
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30761073 caacttttgaaaagataggggttcaaaagtgcaatt 30761108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 46934079 - 46934044
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  46934079 caacttttgaaaagatagggggccaaaagtgcaatt 46934044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 17483604 - 17483566
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  17483604 ccacaacttttgaaaagataggggtccaaaagtgcaatt 17483566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 44177555 - 44177593
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  44177555 ccacaacttttggaaagataggggttcaaaagtgcaatt 44177593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 45760506 - 45760552
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||||    
T  45760506 caacttttgaaaagataggggtccaaaagtgcaattaagccaaaaaa 45760552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 51213347 - 51213301
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||||    
T  51213347 caacttttgaaaagataggggtccaaaagtgcaattaagccaaaaaa 51213301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 2118987 - 2119032
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaa 65  Q
    |||||||||||||||||||||  ||||||||||||| | |||||||    
T  2118987 caacttttgaaaagataggggtccaaaagtgcaattaagccaaaaa 2119032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 41282120 - 41282165
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaa 65  Q
    |||||||||||||||||||||  ||||||||||||| | |||||||    
T  41282120 caacttttgaaaagataggggtccaaaagtgcaattaagccaaaaa 41282165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 9792961 - 9792921
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    ||||||||||||||| ||||| |||||||||||||| ||||    
T  9792961 caacttttgaaaagaaaggggttcaaaagtgcaattaaacc 9792921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 47722189 - 47722149
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    ||||||||| ||||||||||| |||||||||||||| ||||    
T  47722189 caacttttggaaagataggggttcaaaagtgcaattaaacc 47722149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 53568598 - 53568638
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    |||||||| |||||||| |||||||||||||||||| ||||    
T  53568598 caacttttaaaaagataaggggtcaaaagtgcaattaaacc 53568638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 36801872 - 36801914
Alignment:
Q  18 cacaacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    |||||||||||||||||||||||| ||||||||||||| ||||    
T  36801872 cacaacttttgaaaagatagggggccaaaagtgcaattaaacc 36801914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 35711931 - 35711975
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaa 64  Q
    |||||||||||||||||||||  ||||||||||||| ||||||||    
T  35711931 caacttttgaaaagataggggtccaaaagtgcaattaaaccaaaa 35711975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 36204455 - 36204495
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  36204455 caacttttgaaaagatagggggccaaaagtgcaattaaacc 36204495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 4061028 - 4060993
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||| ||||||||||||||    
T  4061028 caacttttgaaaagataggggttcaaaagtgcaatt 4060993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 8409133 - 8409098
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||| |||||||||||||||    
T  8409133 caacttttgaaaagatagggtgtcaaaagtgcaatt 8409098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 11742931 - 11742966
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  11742931 caacttttgaaaagatagggggccaaaagtgcaatt 11742966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 21954348 - 21954383
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||| ||||||||||||||||||||||||||    
T  21954348 caacttttggaaagatagggggtcaaaagtgcaatt 21954383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 38974452 - 38974409
Alignment:
Q  18 cacaacttttgaaaagatagggggtcaaaagtgcaattcaacca 61  Q
    |||||||||||||||||||||||| ||||| ||||||| |||||    
T  38974452 cacaacttttgaaaagatagggggccaaaaatgcaattaaacca 38974409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 45480102 - 45480137
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  45480102 caacttttgaaaagatagggggccaaaagtgcaatt 45480137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 5097055 - 5097093
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  5097055 ccacaacttttggaaagataggggttcaaaagtgcaatt 5097093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 10319166 - 10319212
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||||    
T  10319166 caacttttgaaaagataggggtccaaaagtgcaattaagccaaaaaa 10319212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 3235154 - 3235109
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaa 65  Q
    ||||||||||||||||||| | |||||| ||||||| |||||||||    
T  3235154 caacttttgaaaagataggagttcaaaaatgcaattaaaccaaaaa 3235109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 29673721 - 29673758
Alignment:
Q  18 cacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  29673721 cacaacttttgaaaagatagggggccaaaggtgcaatt 29673758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 30699297 - 30699342
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaa 65  Q
    |||||||||||||||||||||  ||||||||||||| | |||||||    
T  30699297 caacttttgaaaagataggggtccaaaagtgcaattaagccaaaaa 30699342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 38445679 - 38445724
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaa 65  Q
    |||||||||||||||||||||  ||||||||||||| | |||||||    
T  38445679 caacttttgaaaagataggggtccaaaagtgcaattaagccaaaaa 38445724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 39142461 - 39142498
Alignment:
Q  18 cacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||||  |||||||||||||    
T  39142461 cacaacttttgaaaagataggggaccaaaagtgcaatt 39142498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 228231 - 228271
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    |||||||||||||||||||||  ||||||||||||| ||||    
T  228231 caacttttgaaaagataggggtccaaaagtgcaattaaacc 228271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 19778314 - 19778274
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    |||||||||||||||||||||  ||||||||||||| ||||    
T  19778314 caacttttgaaaagataggggtccaaaagtgcaattaaacc 19778274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 21202875 - 21202915
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    ||||||||| |||||||||||| ||||||||||||| ||||    
T  21202875 caacttttggaaagatagggggccaaaagtgcaattaaacc 21202915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 37858325 - 37858360
Alignment:
Q  19 acaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||| ||||||||||||||||||    
T  37858325 acaacttttgaaaagata-ggggtcaaaagtgcaatt 37858360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 3556185 - 3556234
Alignment:
Q  18 cacaacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaat 67  Q
    |||||||||||||||||||||||| ||||| ||||||| | |||||||||    
T  3556185 cacaacttttgaaaagatagggggccaaaaatgcaattaagccaaaaaat 3556234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 13306926 - 13306966
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  13306926 caacttttgaaaagatagggggccaaaagtgcaattaaacc 13306966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 1186961 - 1186996
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  1186961 caacttttgaaaagatagggggccaaaagtgcaatt 1186996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 2016295 - 2016260
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  2016295 caacttttgaaaagatagggggccaaaagtgcaatt 2016260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 9592404 - 9592439
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  9592404 caacttttgaaaagatagggggccaaaagtgcaatt 9592439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 12892864 - 12892829
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  12892864 caacttttgaaaagatagggggccaaaagtgcaatt 12892829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 24296773 - 24296808
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||| ||||||||||||||||    
T  24296773 caacttttgaaaagataggaggtcaaaagtgcaatt 24296808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 29860692 - 29860657
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  29860692 caacttttgaaaagatagggggccaaaagtgcaatt 29860657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 36945553 - 36945518
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  36945553 caacttttgaaaagatagggggccaaaagtgcaatt 36945518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 44120795 - 44120756
Alignment:
Q  21 aacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  44120795 aacttttgaaaagatagggggccaaaagtgcaattaaacc 44120756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 45904217 - 45904252
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||| ||||||||||||||||    
T  45904217 caacttttgaaaagataggaggtcaaaagtgcaatt 45904252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 46282800 - 46282765
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||| ||||||||||||||    
T  46282800 caacttttgaaaagataggggttcaaaagtgcaatt 46282765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 49869692 - 49869727
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||| ||||||||||||||||    
T  49869692 caacttttgaaaagataggaggtcaaaagtgcaatt 49869727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 55
Target Start/End: Complemental strand, 51240021 - 51239990
Alignment:
Q  24 ttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||||||||||    
T  51240021 ttttgaaaagatagggggtcaaaagtgcaatt 51239990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 13019316 - 13019278
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  13019316 ccacaacttttgaaaagataggggtccaaaagtgcaatt 13019278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 14578710 - 14578748
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  14578710 ccacaacttttgaaaagataggggtccaaaagtgcaatt 14578748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 34363091 - 34363137
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||||    
T  34363091 caacttttgaaaagataggggtccaaaagtgcaattaagccaaaaaa 34363137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 38371314 - 38371276
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  38371314 ccacaacttttgaaaagataggggtccaaaagtgcaatt 38371276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 50996078 - 50996040
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  50996078 ccacaacttttggaaagataggggttcaaaagtgcaatt 50996040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 51843565 - 51843599
Alignment:
Q  21 aacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||| |||||||||||||    
T  51843565 aacttttgaaaagatagggggccaaaagtgcaatt 51843599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 7666468 - 7666517
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    |||||||||||| |||||||||||  ||||||||||||| | ||||||||    
T  7666468 ccacaacttttggaaagataggggtccaaaagtgcaattaagccaaaaaa 7666517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 20472589 - 20472544
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaa 65  Q
    ||||||||| |||||||||||  ||||||||||||| |||||||||    
T  20472589 caacttttggaaagataggggtccaaaagtgcaattaaaccaaaaa 20472544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 24543016 - 24543057
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacca 61  Q
    |||||||||||||||||||||  ||||||||||||| |||||    
T  24543016 caacttttgaaaagataggggtccaaaagtgcaattaaacca 24543057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 34625242 - 34625282
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaacc 60  Q
    ||||||||||||||||||| || ||||||||||||| ||||    
T  34625242 caacttttgaaaagataggaggccaaaagtgcaattaaacc 34625282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 1224 - 1178
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    |||||||||||||||||||||  ||||||||||||| |||| |||||    
T  1224 caacttttgaaaagataggggtccaaaagtgcaattaaacctaaaaa 1178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 81348 - 81310
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  81348 ccacaacttttggaaagataggggttcaaaagtgcaatt 81310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 75348 - 75394
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaaa 66  Q
    ||||||||||||||||||| |  ||||||||||||| ||||||||||    
T  75348 caacttttgaaaagataggagtccaaaagtgcaattaaaccaaaaaa 75394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 238665 - 238627
Alignment:
Q  17 ccacaacttttgaaaagatagggggtcaaaagtgcaatt 55  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  238665 ccacaacttttgaaaagataggggtccaaaagtgcaatt 238627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0951 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0951
Description:

Target: scaffold0951; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 3745 - 3700
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaattcaaccaaaaa 65  Q
    ||||||||| |||||||||||  ||||||||||||| |||||||||    
T  3745 caacttttggaaagataggggtccaaaagtgcaattaaaccaaaaa 3700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 47811 - 47844
Alignment:
Q  20 caacttttgaaaagatagggggtcaaaagtgcaa 53  Q
    ||||||||||||||||| ||||||||||||||||    
T  47811 caacttttgaaaagataaggggtcaaaagtgcaa 47844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University