View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12947_low_4 (Length: 487)
Name: NF12947_low_4
Description: NF12947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12947_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Complemental strand, 39554290 - 39553836
Alignment:
| Q |
18 |
acaatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatgaaactgttgaagggaaacttgttcc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554290 |
acaatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatgaaactgttgaagggaaacttgttcc |
39554191 |
T |
|
| Q |
118 |
aaagaagaaacatggtgtgcttgctgttcaggtaaaatattattcatttaaaaatcaatgcaacatgtctacaaatttattagtattatttatagtgttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554190 |
aaagaagaaacatggtgtgcttgctgttcaggtaaaatattattcatttaaaaatcaatgcaacatgtctacaaatttattagtattatttatagtgttt |
39554091 |
T |
|
| Q |
218 |
taattatcatcgttactatgcaggcaacttggatgaaatgtggtggtttagtagtggcttgcacttttgaccatcgtatagctgatgcctattctgcaaa |
317 |
Q |
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|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554090 |
taattatcattgttactatgcaggcaacttggatgaaatgtggtggtttagtagtggcttgcacttttgaccatcgtatagctgatgcctattctgcaaa |
39553991 |
T |
|
| Q |
318 |
catgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtcacttctgacccca |
417 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39553990 |
catgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtcacttctgacccca |
39553891 |
T |
|
| Q |
418 |
cgacgcccaccttccatccatccttcaatttatgacatgtatgtccccatctctg |
472 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39553890 |
cgacgcccaccttccatccatccttcaatttatgacatgtatgtccccatctctg |
39553836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 211 - 472
Target Start/End: Complemental strand, 39544078 - 39543817
Alignment:
| Q |
211 |
agtgttttaattatcatcgttactatgcaggcaacttggatgaaatgtggtggtttagtagtggcttgcacttttgaccatcgtatagctgatgcctatt |
310 |
Q |
| |
|
||||||||||| |||| |||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || |||| |
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|
| T |
39544078 |
agtgttttaatcgtcattgttactatgcagacaacatggatgaaatgtggtggattagtagtggcttgcacttttgaccatcgtatagcggacgcatatt |
39543979 |
T |
|
| Q |
311 |
ctgcaaacatgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtcacttct |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| | |
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| T |
39543978 |
ctgcaaacatgttccttgtatcatgggccgagatagctcgacccaacaataacaagtctttgatcccaacaatgcaaccttgttttagacggtcacttat |
39543879 |
T |
|
| Q |
411 |
gaccccacgacgcccaccttccatccatccttcaatttatgacatgtatgtccccatctctg |
472 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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|
| T |
39543878 |
gaccccacgacgcccaccttccatacatccttcactttatgacatgtatgtccccatctctg |
39543817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 236 - 470
Target Start/End: Complemental strand, 39587182 - 39586948
Alignment:
| Q |
236 |
tgcaggcaacttggatgaaatgtggtggtttagtagtggcttgcacttttgaccatcgtatagctgatgcctattctgcaaacatgttccttgtatcatg |
335 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||| ||||| || |||||||||||||||||||| ||||||||||| |
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|
| T |
39587182 |
tgcaggcaacttggatgaaatgtggtgggttagtagtggcgtgcaattttgaccatcgaatagccgacgcctattctgcaaacatgtttcttgtatcatg |
39587083 |
T |
|
| Q |
336 |
ggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtcacttctgaccccacgacgcccaccttccatc |
435 |
Q |
| |
|
|||||||||||| || | | ||||||||||||||||||||||||| ||||||||||||| | |||| |||||||||||| ||| ||||||||||||| |
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|
| T |
39587082 |
ggccgagatagcccgatcgagcaataacaagtctttgatcccaacaacacaaccttgttttcaaaggtcccttctgaccccaagacacccaccttccatc |
39586983 |
T |
|
| Q |
436 |
catccttcaatttatgacatgtatgtccccatctc |
470 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||| |
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|
| T |
39586982 |
catccttcactctatgacatgtacatccccatctc |
39586948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 39544976 - 39544844
Alignment:
| Q |
18 |
acaatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatgaaactgttgaagggaaacttgttcc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
39544976 |
acaatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatgaaactgttgaagggaagcttgttcc |
39544877 |
T |
|
| Q |
118 |
aaagaagaaacatggtgtgcttgctgttcaggt |
150 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
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|
| T |
39544876 |
aaagaagaaacatggtgtgcttgctgctcaggt |
39544844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 23 - 150
Target Start/End: Complemental strand, 39587402 - 39587275
Alignment:
| Q |
23 |
cgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatgaaactgttgaagggaaacttgttccaaaga |
122 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| ||||| ||||| |||||||||| ||||||||||||| |
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| T |
39587402 |
cgtggtgtggattttgttgaagctgttgctgatgttgagttgcaatctctcgatttgtataagccagaggaaaccattgaagggaagcttgttccaaaga |
39587303 |
T |
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| Q |
123 |
agaaacatggtgtgcttgctgttcaggt |
150 |
Q |
| |
|
||||| ||||||| |||||||||||||| |
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|
| T |
39587302 |
agaaatatggtgtacttgctgttcaggt |
39587275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 17484883 - 17484768
Alignment:
| Q |
23 |
cgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatgaaactgttgaagggaaacttgttccaaaga |
122 |
Q |
| |
|
||||| || ||||||||||||||| |||||||||||||| | |||| |||||||| ||||| || |||||| |||||||||| || ||||||| |||| |
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|
| T |
17484883 |
cgtggtgttgattttgttgaagctgttgctgatgttgagcttcaatgcctcaatttttataaccctgatgaatctgttgaaggaaagtttgttcctaaga |
17484784 |
T |
|
| Q |
123 |
agaaacatggtgtgct |
138 |
Q |
| |
|
|||| ||||| ||||| |
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|
| T |
17484783 |
agaagcatggcgtgct |
17484768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 344
Target Start/End: Complemental strand, 17503893 - 17503782
Alignment:
| Q |
233 |
ctatgcaggcaacttggatgaaatgtggtggtttagtagtggcttgcacttttgaccatcgtatagctgatgcctattctgcaaacatgttccttgtatc |
332 |
Q |
| |
|
||||||||||||||| | || |||||||| |||||||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||||||||||| ||||| |
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|
| T |
17503893 |
ctatgcaggcaacttcattaaagtgtggtgggatagtagtggcatgcacatttgatcatcgcatagcagatgcatattcaacaaacatgttcctagtatc |
17503794 |
T |
|
| Q |
333 |
atgggccgagat |
344 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17503793 |
atgggccgagat |
17503782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 17507161 - 17507043
Alignment:
| Q |
20 |
aatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatgaaactgttgaagggaaacttgttccaa |
119 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||||||||| | |||| |||||||| ||||| || |||||| |||||||||| || ||||||| | |
|
|
| T |
17507161 |
aatcgtggtgttgattttgttgaagctgttgctgatgttgaacttcaatgcctcaatttttataaccctgatgaatctgttgaaggaaagtttgttccta |
17507062 |
T |
|
| Q |
120 |
agaagaaacatggtgtgct |
138 |
Q |
| |
|
||||||| ||||| ||||| |
|
|
| T |
17507061 |
agaagaagcatggcgtgct |
17507043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 349
Target Start/End: Complemental strand, 17475735 - 17475654
Alignment:
| Q |
268 |
gtagtggcttgcacttttgaccatcgtatagctgatgcctattctgcaaacatgttccttgtatcatgggccgagatagctc |
349 |
Q |
| |
|
|||||||| ||||| ||||| ||||| ||||| |||||||| || ||||||||||| | ||||||||||||||||| |||| |
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|
| T |
17475735 |
gtagtggcatgcacatttgatcatcgcatagcagatgcctactcaacaaacatgttcttagtatcatgggccgagatggctc |
17475654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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