View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12947_low_7 (Length: 447)

Name: NF12947_low_7
Description: NF12947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12947_low_7
NF12947_low_7
[»] chr7 (11 HSPs)
chr7 (19-364)||(7324067-7324415)
chr7 (191-364)||(8612632-8612807)
chr7 (382-440)||(7324477-7324535)
chr7 (258-326)||(11070023-11070091)
chr7 (260-364)||(45484747-45484850)
chr7 (260-364)||(7115959-7116063)
chr7 (258-318)||(29478774-29478834)
chr7 (275-326)||(22994227-22994278)
chr7 (272-326)||(20176981-20177035)
chr7 (205-233)||(12163329-12163357)
chr7 (205-233)||(38993216-38993244)
[»] chr6 (6 HSPs)
chr6 (86-364)||(27095631-27095899)
chr6 (258-351)||(33501505-33501598)
chr6 (275-326)||(22459932-22459983)
chr6 (262-294)||(10495503-10495535)
chr6 (275-323)||(16227210-16227258)
chr6 (205-233)||(30492275-30492303)
[»] chr3 (7 HSPs)
chr3 (258-364)||(10306166-10306271)
chr3 (258-364)||(10291102-10291207)
chr3 (258-364)||(11059308-11059413)
chr3 (260-364)||(12484554-12484656)
chr3 (258-364)||(25374288-25374393)
chr3 (205-233)||(10623353-10623381)
chr3 (205-233)||(20952319-20952347)
[»] chr1 (7 HSPs)
chr1 (260-362)||(10758937-10759038)
chr1 (258-326)||(12011059-12011127)
chr1 (260-364)||(14267791-14267894)
chr1 (290-364)||(45396934-45397007)
chr1 (282-323)||(1763174-1763215)
chr1 (205-233)||(36776705-36776733)
chr1 (205-233)||(46391629-46391657)
[»] chr8 (3 HSPs)
chr8 (260-364)||(22717390-22717493)
chr8 (275-323)||(44549345-44549393)
chr8 (201-229)||(13567028-13567056)
[»] chr5 (2 HSPs)
chr5 (260-364)||(29501210-29501313)
chr5 (263-326)||(24837105-24837168)
[»] chr2 (5 HSPs)
chr2 (275-323)||(22021301-22021349)
chr2 (258-364)||(24519847-24519952)
chr2 (205-233)||(3914355-3914383)
chr2 (205-233)||(27206492-27206520)
chr2 (205-233)||(28698126-28698154)
[»] chr4 (4 HSPs)
chr4 (146-229)||(45831010-45831093)
chr4 (259-351)||(24575923-24576015)
chr4 (205-233)||(38499972-38500000)
chr4 (275-323)||(39878626-39878674)
[»] scaffold0020 (1 HSPs)
scaffold0020 (260-364)||(122708-122811)
[»] scaffold0939 (1 HSPs)
scaffold0939 (261-364)||(525-626)
[»] scaffold0056 (1 HSPs)
scaffold0056 (260-324)||(68442-68506)
[»] scaffold0041 (1 HSPs)
scaffold0041 (205-233)||(3512-3540)


Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 7324067 - 7324415
Alignment:
Q  19 ctcagggtccactccatcacctccaaaatgatggaatattcgggtagccggcaggacatgttattgttgtttggtttgacacgattctgtcctttttgtc 118  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  7324067 ctcagggtccactccatcacctcccaaatgatggaatattcggggagccggcaggacatgttattgttgtttggtttgacacaattccgtcctttttgtc 7324166  T
Q  119 cttaaatttctttagggatatgaattgctttcctaactatcgctttccctaggatttctgttgtttctttctgtttcctgcatctctttttgagggtttt 218  Q
     ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7324167 tttagatttctttagggatatgaatttctttcctaactatcgctttccctaggatttccgttgtttctttctgtttcctgcatctctttttgagggtttt 7324266  T
Q  219 ggcctagtcccccc---tgtatatatattttaaccnnnnnnnaataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaa 315  Q
    ||||||||||||||   | ||||||||||||  ||       |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||     
T  7324267 ggcctagtcccccctcttttatatatatttttccctttttataataatatatatggagtaggcggtagaggatgggagctctagttggatgccaacctag 7324366  T
Q  316 ttgggatgtttatggcactccttgatgcctaacctacttcttgccttat 364  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  7324367 ttgggatgtttctggcactccttgatgcctaacctactttttgccttat 7324415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 191 - 364
Target Start/End: Complemental strand, 8612807 - 8612632
Alignment:
Q  191 gtttcctgcatctctttttgagggttttggcctagtcccccc--tgtatatatattttaaccnnnnnnnaataatatatatggagtaggcggtagaggat 288  Q
    |||| |||||||| ||| |||||||||||||||||| || |   ||||||||||||||  ||       |||||||||||||||||| ||||||||||||    
T  8612807 gttttctgcatctttttatgagggttttggcctagttccactcttgtatatatattttttcccttttttaataatatatatggagtaagcggtagaggat 8612708  T
Q  289 gggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgccttat 364  Q
     |||| |   |||||||| ||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  8612707 aggagcttcggttgggtgtcaacctagttgggatgtttctggcgctccttgatgcctaacctacttcttgccttat 8612632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 382 - 440
Target Start/End: Original strand, 7324477 - 7324535
Alignment:
Q  382 attttatgaacctccagtaaaatacggcatgtcctagaaaacttctaattcctttgata 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7324477 attttatgaacctccagtaaaatacggcatgtcctagaaaacttctaatccctttgata 7324535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 11070023 - 11070091
Alignment:
Q  258 aataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgttt 326  Q
    ||||||||||||||||||| ||||||| |||| |||||  |||||| |||||||||| |||||||||||    
T  11070023 aataatatatatggagtagacggtagaagatgagagtttcagttggatgccaacctagttgggatgttt 11070091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 364
Target Start/End: Complemental strand, 45484850 - 45484747
Alignment:
Q  260 taatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgc 359  Q
    ||||||||||||| ||| || || ||||| ||||||| ||| |||||| ||||||| |||||||| | |||| |||||||||||||  |||| |||||||    
T  45484850 taatatatatggaatagtcgatataggataggagttccagtagggtgcaaacctaactgggatgtctctggc-ctccttgatgcctcccctatttcttgc 45484752  T
Q  360 cttat 364  Q
    |||||    
T  45484751 cttat 45484747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 364
Target Start/End: Original strand, 7115959 - 7116063
Alignment:
Q  260 taatatatatgg-agtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttg 358  Q
    |||||||||||| ||||| ||||| ||||| ||||||| ||  ||||||||||||| ||||||||| | | |   ||||||||||||  |||||||||||    
T  7115959 taatatatatgggagtagtcggtataggataggagttcaagcggggtgccaacctagttgggatgtctcttg-gttccttgatgcctcccctacttcttg 7116057  T
Q  359 ccttat 364  Q
    ||||||    
T  7116058 ccttat 7116063  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 29478834 - 29478774
Alignment:
Q  258 aataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattg 318  Q
    |||||||||||| ||||||||||||||||||| |||||  ||||  ||| |||||||||||    
T  29478834 aataatatatattgagtaggcggtagaggatgagagtttcagtttcgtgtcaacctaattg 29478774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 326
Target Start/End: Complemental strand, 22994278 - 22994227
Alignment:
Q  275 aggcggtagaggatgggagttctagttgggtgccaacctaattgggatgttt 326  Q
    |||||||| |||||||||| | | |||||||||||||||| |||||||||||    
T  22994278 aggcggtacaggatgggagctgttgttgggtgccaacctagttgggatgttt 22994227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 326
Target Start/End: Original strand, 20176981 - 20177035
Alignment:
Q  272 agtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgttt 326  Q
    ||||||||||||||||||||||| | |||  |||| ||||||| |||||||||||    
T  20176981 agtaggcggtagaggatgggagtcccagtcaggtgtcaacctagttgggatgttt 20177035  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 12163329 - 12163357
Alignment:
Q  205 tttttgagggttttggcctagtcccccct 233  Q
    |||||||||||||||||||||||||||||    
T  12163329 tttttgagggttttggcctagtcccccct 12163357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 38993244 - 38993216
Alignment:
Q  205 tttttgagggttttggcctagtcccccct 233  Q
    |||||||||||||||||||||||||||||    
T  38993244 tttttgagggttttggcctagtcccccct 38993216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 86 - 364
Target Start/End: Original strand, 27095631 - 27095899
Alignment:
Q  86 tgtttggtttgacacgattctgtcctttttgtccttaaatttctttagggatatgaattgctttcctaactatcgctttccctaggatttctgttgtttc 185  Q
    ||||||||||||||| || | ||| |||||||| ||| ||||||| ||||| |||||| |||| ||||||||||| ||||| ||| |||| ||||| |||    
T  27095631 tgtttggtttgacacaatgccgtcttttttgtctttagatttcttgagggacatgaatagcttgcctaactatcgttttccttagaatttatgttggttc 27095730  T
Q  186 tttctgtttcctgcatctctttttgagggttttggcctagtcccccc---tgtatatatattttaaccnnnnnnnaataatatatatggagtaggcggta 282  Q
    |||| |||| ||||| || ||| ||||||||||||||||| ||||||   ||||||||||||||  |        ||||||||||||||||||||||||     
T  27095731 tttccgttttctgcacctttttctgagggttttggcctagccccccctcttgtatatatatttttccgtgtttttaataatatatatggagtaggcggt- 27095829  T
Q  283 gaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgccttat 364  Q
               ||| ||||||||| ||||||| || |||||||| |||| |||||||||||||||||||||| |||||||||    
T  27095830 -----------ttc-agttgggtgtcaacctagttaggatgtttctggcgctccttgatgcctaacctactttttgccttat 27095899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 351
Target Start/End: Complemental strand, 33501598 - 33501505
Alignment:
Q  258 aataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaaccta 351  Q
    |||||||||||| ||| |||| ||||||||||||||||  ||||   |||||||||| |||||||||||||| | |||| ||||||||||||||    
T  33501598 aataatatatattgagcaggcagtagaggatgggagtttcagtttcatgccaacctagttgggatgtttatgtctctccctgatgcctaaccta 33501505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 326
Target Start/End: Original strand, 22459932 - 22459983
Alignment:
Q  275 aggcggtagaggatgggagttctagttgggtgccaacctaattgggatgttt 326  Q
    |||||||| || ||||||||| | |||||||||||||||| |||||||||||    
T  22459932 aggcggtaaagaatgggagttgttgttgggtgccaacctagttgggatgttt 22459983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 10495503 - 10495535
Alignment:
Q  262 atatatatggagtaggcggtagaggatgggagt 294  Q
    ||||||||||||||||||||||||||| |||||    
T  10495503 atatatatggagtaggcggtagaggataggagt 10495535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 16227210 - 16227258
Alignment:
Q  275 aggcggtagaggatgggagttctagttgggtgccaacctaattgggatg 323  Q
    ||||||||||||||||| |||   |||||||||||||||| ||||||||    
T  16227210 aggcggtagaggatgggtgtttctgttgggtgccaacctagttgggatg 16227258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 30492275 - 30492303
Alignment:
Q  205 tttttgagggttttggcctagtcccccct 233  Q
    |||||||||||||||||||||||||||||    
T  30492275 tttttgagggttttggcctagtcccccct 30492303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 258 - 364
Target Start/End: Original strand, 10306166 - 10306271
Alignment:
Q  258 aataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttctt 357  Q
    |||||||||||||||||||||||||||||||||||||||  ||||| ||||||||| ||||||||||||  | | |||||| |||||||||||| |||||    
T  10306166 aataatatatatggagtaggcggtagaggatgggagttccggttggatgccaacctgattgggatgtttccgac-ctccttaatgcctaacctatttctt 10306264  T
Q  358 gccttat 364  Q
    | |||||    
T  10306265 gacttat 10306271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 258 - 364
Target Start/End: Original strand, 10291102 - 10291207
Alignment:
Q  258 aataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttctt 357  Q
    |||||||||||||||||||| ||||||||||| ||||||  |||||||||||||||| ||| |||||||  ||| |||||| ||| |||||||| |||||    
T  10291102 aataatatatatggagtaggtggtagaggatgagagttccggttgggtgccaacctagttgagatgtttccggc-ctccttaatgtctaacctatttctt 10291200  T
Q  358 gccttat 364  Q
    | |||||    
T  10291201 gacttat 10291207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 258 - 364
Target Start/End: Complemental strand, 11059413 - 11059308
Alignment:
Q  258 aataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttctt 357  Q
    ||||||||||||||||||||||| | || |||||||||| ||| | ||||||||||| ||||||||| | |||  |||||||||  ||||||||||||||    
T  11059413 aataatatatatggagtaggcggcaaagaatgggagttccagtggagtgccaacctagttgggatgtctctgg-gctccttgatatctaacctacttctt 11059315  T
Q  358 gccttat 364  Q
    || ||||    
T  11059314 gctttat 11059308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 260 - 364
Target Start/End: Original strand, 12484554 - 12484656
Alignment:
Q  260 taatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgc 359  Q
    ||||||||||||||||| ||||| ||||| ||||||| ||| ||||| ||||||| ||||||||| |  ||  |||||||||||||  ||||||||||||    
T  12484554 taatatatatggagtagtcggtataggataggagttccagtggggtgtcaacctagttgggatgtctcggg--ctccttgatgcctcccctacttcttgc 12484651  T
Q  360 cttat 364  Q
    |||||    
T  12484652 cttat 12484656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 258 - 364
Target Start/End: Complemental strand, 25374393 - 25374288
Alignment:
Q  258 aataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttctt 357  Q
    ||||||||||||||||| ||||| | ||||| ||||| || || ||||||||| ||| ||||||||| |   | || |||||||||||||||||||||||    
T  25374393 aataatatatatggagttggcggcataggattggagtcctggtggggtgccaatctagttgggatgtct-ccgtaccccttgatgcctaacctacttctt 25374295  T
Q  358 gccttat 364  Q
    |||||||    
T  25374294 gccttat 25374288  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 10623381 - 10623353
Alignment:
Q  205 tttttgagggttttggcctagtcccccct 233  Q
    |||||||||||||||||||||||||||||    
T  10623381 tttttgagggttttggcctagtcccccct 10623353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 20952319 - 20952347
Alignment:
Q  205 tttttgagggttttggcctagtcccccct 233  Q
    |||||||||||||||||||||||||||||    
T  20952319 tttttgagggttttggcctagtcccccct 20952347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 260 - 362
Target Start/End: Complemental strand, 10759038 - 10758937
Alignment:
Q  260 taatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgc 359  Q
    ||||||||||||||||| ||||| ||||| ||||||| ||| ||||||||||||| ||||||||| | |||  |||||||||||||  ||||||||||||    
T  10759038 taatatatatggagtagtcggtataggataggagttccagtggggtgccaacctagttgggatgtctctgg-gctccttgatgcctcccctacttcttgc 10758940  T
Q  360 ctt 362  Q
    |||    
T  10758939 ctt 10758937  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 12011059 - 12011127
Alignment:
Q  258 aataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgttt 326  Q
    ||||||||||||||||||||||||||||||||||||| |  ||||| |||||||||| |||| ||||||    
T  12011059 aataatatatatggagtaggcggtagaggatgggagtcccggttggatgccaacctagttggcatgttt 12011127  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 364
Target Start/End: Complemental strand, 14267894 - 14267791
Alignment:
Q  260 taatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgc 359  Q
    ||||||||||||||||| ||||| | ||| ||||||| ||| || |||||||||| ||| ||||| | |||| |||||||||||||  ||||||||||||    
T  14267894 taatatatatggagtagtcggtataagataggagttccagtgggatgccaacctagttgagatgtctctggc-ctccttgatgccttccctacttcttgc 14267796  T
Q  360 cttat 364  Q
    |||||    
T  14267795 cttat 14267791  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 290 - 364
Target Start/End: Complemental strand, 45397007 - 45396934
Alignment:
Q  290 ggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgccttat 364  Q
    |||||||  |||||||||||||||| ||||||| ||| |||| ||||||||||||||||||| ||||||| ||||    
T  45397007 ggagttccggttgggtgccaacctagttgggatatttctggc-ctccttgatgcctaacctatttcttgctttat 45396934  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 1763174 - 1763215
Alignment:
Q  282 agaggatgggagttctagttgggtgccaacctaattgggatg 323  Q
    ||||||||||||||   |||||||||||||||||||||||||    
T  1763174 agaggatgggagtttctgttgggtgccaacctaattgggatg 1763215  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 36776733 - 36776705
Alignment:
Q  205 tttttgagggttttggcctagtcccccct 233  Q
    |||||||||||||||||||||||||||||    
T  36776733 tttttgagggttttggcctagtcccccct 36776705  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 46391657 - 46391629
Alignment:
Q  205 tttttgagggttttggcctagtcccccct 233  Q
    |||||||||||||||||||||||||||||    
T  46391657 tttttgagggttttggcctagtcccccct 46391629  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 364
Target Start/End: Original strand, 22717390 - 22717493
Alignment:
Q  260 taatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgc 359  Q
    ||||||||||||||||| ||||| ||||| | ||||| ||| ||||||||||||| ||||||||| |  ||| |||||||||||||  |||||||||||     
T  22717390 taatatatatggagtagtcggtataggatagaagttccagtggggtgccaacctagttgggatgtctgcggc-ctccttgatgcctcccctacttcttgt 22717488  T
Q  360 cttat 364  Q
    |||||    
T  22717489 cttat 22717493  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 44549393 - 44549345
Alignment:
Q  275 aggcggtagaggatgggagttctagttgggtgccaacctaattgggatg 323  Q
    |||||||||||||||||||||   |||||||||||||||| ||||||||    
T  44549393 aggcggtagaggatgggagtttctgttgggtgccaacctagttgggatg 44549345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 13567056 - 13567028
Alignment:
Q  201 tctctttttgagggttttggcctagtccc 229  Q
    |||||||||||||||||||||||||||||    
T  13567056 tctctttttgagggttttggcctagtccc 13567028  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 364
Target Start/End: Original strand, 29501210 - 29501313
Alignment:
Q  260 taatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgc 359  Q
    ||||||||||| |||||  |||| ||||| ||||||| ||| |||||||||| || ||||||||| | |||  |||||||||||||  |||||||||||     
T  29501210 taatatatatgaagtagttggtataggataggagttccagtggggtgccaacgtagttgggatgtctctgg-gctccttgatgcctcccctacttcttgt 29501308  T
Q  360 cttat 364  Q
    |||||    
T  29501309 cttat 29501313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 326
Target Start/End: Complemental strand, 24837168 - 24837105
Alignment:
Q  263 tatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgttt 326  Q
    ||||||| ||||||| |||||||||| ||||||  |||| |||||||||||| ||| |||||||    
T  24837168 tatatattgagtaggtggtagaggataggagtttcagttaggtgccaacctagttgagatgttt 24837105  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 22021349 - 22021301
Alignment:
Q  275 aggcggtagaggatgggagttctagttgggtgccaacctaattgggatg 323  Q
    ||||||||||||||||||||| | |||||||||||||||| ||||||||    
T  22021349 aggcggtagaggatgggagttattgttgggtgccaacctagttgggatg 22021301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 364
Target Start/End: Original strand, 24519847 - 24519952
Alignment:
Q  258 aataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttctt 357  Q
    |||||||| |||| ||||||||  | |||||  |||||| ||| ||||||||||||| ||||||||| | |||  |||||||||| ||||||| || |||    
T  24519847 aataatatttatgaagtaggcgacaaaggatatgagttccagtggggtgccaacctagttgggatgtctctgg-gctccttgatgtctaaccttctcctt 24519945  T
Q  358 gccttat 364  Q
    |||||||    
T  24519946 gccttat 24519952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 3914383 - 3914355
Alignment:
Q  205 tttttgagggttttggcctagtcccccct 233  Q
    |||||||||||||||||||||||||||||    
T  3914383 tttttgagggttttggcctagtcccccct 3914355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 27206520 - 27206492
Alignment:
Q  205 tttttgagggttttggcctagtcccccct 233  Q
    |||||||||||||||||||||||||||||    
T  27206520 tttttgagggttttggcctagtcccccct 27206492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 28698126 - 28698154
Alignment:
Q  205 tttttgagggttttggcctagtcccccct 233  Q
    |||||||||||||||||||||||||||||    
T  28698126 tttttgagggttttggcctagtcccccct 28698154  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 45831010 - 45831093
Alignment:
Q  146 ctttcctaactatcgctttccctaggatttctgttgtttctttctgtttcctgcatctctttttgagggttttggcctagtccc 229  Q
    |||||||||||| |  |||||||| ||||| |||||||||||||  ||| |||| | ||||||| ||||||||||| |||||||    
T  45831010 ctttcctaactaccattttccctaagatttttgttgtttctttcctttttctgcttttcttttttagggttttggcttagtccc 45831093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 351
Target Start/End: Original strand, 24575923 - 24576015
Alignment:
Q  259 ataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaaccta 351  Q
    ||||||||||| |||||| ||||||| ||||||| ||  ||||  |||||||| || ||| |||||||||| |  ||| ||||||||||||||    
T  24575923 ataatatatattgagtagacggtagatgatgggactttcagtttcgtgccaacttagttgagatgtttatgtctatccgtgatgcctaaccta 24576015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 38500000 - 38499972
Alignment:
Q  205 tttttgagggttttggcctagtcccccct 233  Q
    |||||||||||||||||||||||||||||    
T  38500000 tttttgagggttttggcctagtcccccct 38499972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 39878674 - 39878626
Alignment:
Q  275 aggcggtagaggatgggagttctagttgggtgccaacctaattgggatg 323  Q
    |||||||||||||| || ||||  |||||||||||||||| ||||||||    
T  39878674 aggcggtagaggattggggttcctgttgggtgccaacctagttgggatg 39878626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 364
Target Start/End: Complemental strand, 122811 - 122708
Alignment:
Q  260 taatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgc 359  Q
    ||||||||||| || ||| || | ||||| ||||||| ||| ||||||||||||| ||||||||| | | | ||| ||||||  ||||||| ||||||||    
T  122811 taatatatatgtagaaggtggcaaaggataggagttccagtagggtgccaacctagttgggatgtctct-gaacttcttgatttctaaccttcttcttgc 122713  T
Q  360 cttat 364  Q
    |||||    
T  122712 cttat 122708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0939 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 364
Target Start/End: Original strand, 525 - 626
Alignment:
Q  261 aatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgcc 360  Q
    |||||||||||||||| | ||||| ||||||| || | | |||| || ||| || |||||||| || ||| |||||||||||||||||||  ||||||||    
T  525 aatatatatggagtagacagtagatgatgggattt-tcggtgggcgcgaacgtagttgggatgcttctgg-actccttgatgcctaacctgattcttgcc 622  T
Q  361 ttat 364  Q
    ||||    
T  623 ttat 626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 68442 - 68506
Alignment:
Q  260 taatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgt 324  Q
    |||||||||||||||||  |||| |||||  |||||| ||| ||||| ||||||| |||||||||    
T  68442 taatatatatggagtagtaggtataggatacgagttccagtggggtgacaacctagttgggatgt 68506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 3540 - 3512
Alignment:
Q  205 tttttgagggttttggcctagtcccccct 233  Q
    |||||||||||||||||||||||||||||    
T  3540 tttttgagggttttggcctagtcccccct 3512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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