View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12948_high_5 (Length: 238)

Name: NF12948_high_5
Description: NF12948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12948_high_5
NF12948_high_5
[»] chr3 (29 HSPs)
chr3 (1-220)||(10374686-10374905)
chr3 (1-172)||(10518542-10518713)
chr3 (5-176)||(9839914-9840085)
chr3 (1-176)||(10261751-10261926)
chr3 (2-176)||(11780824-11780998)
chr3 (5-176)||(9850792-9850963)
chr3 (9-220)||(11770243-11770454)
chr3 (5-176)||(10581663-10581834)
chr3 (1-174)||(10127980-10128153)
chr3 (1-174)||(10664581-10664754)
chr3 (1-173)||(10362639-10362811)
chr3 (5-176)||(10089843-10090014)
chr3 (1-174)||(10033055-10033228)
chr3 (5-176)||(10196726-10196897)
chr3 (5-176)||(10432889-10433060)
chr3 (7-175)||(10501640-10501808)
chr3 (1-175)||(10678492-10678666)
chr3 (1-176)||(10185292-10185467)
chr3 (5-127)||(13853528-13853650)
chr3 (37-181)||(10528403-10528547)
chr3 (1-176)||(10078319-10078497)
chr3 (5-132)||(11158862-11158989)
chr3 (10-127)||(11129879-11129996)
chr3 (1-94)||(10078545-10078638)
chr3 (10-132)||(10890403-10890525)
chr3 (5-104)||(11147699-11147798)
chr3 (5-132)||(11245468-11245595)
chr3 (1-74)||(10185535-10185608)
chr3 (1-65)||(13396650-13396714)
[»] scaffold0083 (2 HSPs)
scaffold0083 (5-176)||(56447-56618)
scaffold0083 (5-176)||(57256-57427)
[»] chr2 (1 HSPs)
chr2 (5-134)||(26907983-26908112)
[»] chr8 (2 HSPs)
chr8 (1-182)||(44956518-44956699)
chr8 (5-175)||(11486089-11486259)
[»] chr4 (1 HSPs)
chr4 (3-176)||(17851769-17851942)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 10374686 - 10374905
Alignment:
Q  1 catgttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10374686 catgttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttg 10374785  T
Q  101 tatacctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataagtagttttcattgaatgaatgggagga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10374786 tatacctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataagtagttttcattgaatgaatgggagga 10374885  T
Q  201 agtggatagaaagcttcgca 220  Q
    ||||||||||||||||||||    
T  10374886 agtggatagaaagcttcgca 10374905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 10518713 - 10518542
Alignment:
Q  1 catgttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttg 100  Q
    |||||||||||||||||||||| ||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||  || |||||||||     
T  10518713 catgttgtatcaggcaagctttcgatgtaagtgaaggaggtatctaaataccgcaattgcaccaaattgccaattgaatctggtagcttggtgatgtttc 10518614  T
Q  101 tatacctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggata 172  Q
    ||||||| || |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||    
T  10518613 tataccttgacagtgataacacacgcaacctgttttgtgatgggagcagatcatcaaccacctttaaggata 10518542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 5 - 176
Target Start/End: Complemental strand, 9840085 - 9839914
Alignment:
Q  5 ttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgtata 104  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||  ||  |||||||| ||||    
T  9840085 ttgtatcaggcaagcttttgattctagtgaaggagatatctagataccgcaactgcaccaaatttccaattgaatcaggtagcttgatgatgtttttata 9839986  T
Q  105 cctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataagta 176  Q
    ||||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||||    
T  9839985 cctcgatagtgataacacacgcaaccttttttgtgatggtagcaaatcattaaccaccttgaaggataagta 9839914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 10261926 - 10261751
Alignment:
Q  1 catgttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttg 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||  ||||||||||| ||||||||||||||||  ||  ||||||||     
T  10261926 catgttgtatcaggcaagcttttgattttagtgaaggagatatctagataacgcagctgcaccaaatttccaattgaatctggtagcttgatgatgtttt 10261827  T
Q  101 tatacctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataagta 176  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||||    
T  10261826 tataccttgatagtgataacacacgcaaccttttttgtgatggtagcaaatcattaaccaccttgaaggataagta 10261751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 176
Target Start/End: Original strand, 11780824 - 11780998
Alignment:
Q  2 atgttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgt 101  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||  || ||||||||| |    
T  11780824 atgttgtatcaggcaatcttttgattttagtgaaggagatatctagataccgcaactgcaccaaatttccaattgaatctggtagcttggtgatgttttt 11780923  T
Q  102 atacctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataagta 176  Q
    |||||| ||||| ||||||||||||| ||||||||||||||| || | ||||||||||||||| |||||||||||    
T  11780924 ataccttgatagggataacacacgcaaccttttttgtgatggtaggaaatcatcaaccacctttaaggataagta 11780998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 5 - 176
Target Start/End: Complemental strand, 9850963 - 9850792
Alignment:
Q  5 ttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgtata 104  Q
    ||||||||||||||||||||||   |||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||  ||  |||||||| ||||    
T  9850963 ttgtatcaggcaagcttttgattccagtgaatgagatatctagataccgcaactgcaccaaatttccaattgaatcaggtagcttgatgatgtttttata 9850864  T
Q  105 cctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataagta 176  Q
    ||||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||||    
T  9850863 cctcgatagtgataacacacgcaaccttttttgtgatggtagcaaatcattaaccaccttgaaggataagta 9850792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 11770454 - 11770243
Alignment:
Q  9 atcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgtatacctc 108  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||  || ||||||||| |||||||     
T  11770454 atcaggcaaacttttgattttagtgaaggagatatctagataccgcaactgcaccaaatttccaattgaatctggtagcttggtgatgtttttatacctt 11770355  T
Q  109 gatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataagtagttttcattgaatgaatg-ggaggaagtggat 207  Q
    ||||| ||||||||||||| ||||||||||||||| || | |||||||||||| || ||||||||||| || | ||||||  | || |||| ||||||||    
T  11770354 gatagggataacacacgcaaccttttttgtgatggtaggaaatcatcaaccacttttaaggataagtaattgtaattgaa-cattgtggagtaagtggat 11770256  T
Q  208 agaaagcttcgca 220  Q
    || ||||||||||    
T  11770255 aggaagcttcgca 11770243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 176
Target Start/End: Complemental strand, 10581834 - 10581663
Alignment:
Q  5 ttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgtata 104  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||  || |||||||||  |||    
T  10581834 ttgtatcaggcaagctttcgatgttagtgaaggagatatctagataccgcaactgcaccaaatttccaattgaatctggtagcttggtgatgttttgata 10581735  T
Q  105 cctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataagta 176  Q
    ||  ||||| ||||||||||||| |||||||||||| || || | |||||||| ||||||||||||||||||    
T  10581734 ccctgatagcgataacacacgcaaccttttttgtgacggtagaaaatcatcaatcaccttgaaggataagta 10581663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 10128153 - 10127980
Alignment:
Q  1 catgttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttg 100  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||||||| ||||||||||||||||  || ||||||||      
T  10128153 catgttgtatcaggcaagcttttgattttagtgcaggagatatctagataccgtaactgcaccaaatttccaattgaatctggtagcttggtgatgttca 10128054  T
Q  101 tatacctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataag 174  Q
    ||||||  ||||||||||| ||||||| || |||||||||||| |||| |||||||||||||||| ||||||||    
T  10128053 tataccatgatagtgataaaacacgcaaccgtttttgtgatggtagcaaatcatcaaccaccttggaggataag 10127980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 10664754 - 10664581
Alignment:
Q  1 catgttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttg 100  Q
    |||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||| ||| |||||||||     
T  10664754 catgttgtatcaggcaagctttcgattttagtgaaagagatatctagataccgcaattgcactaaattgccaattgtatctggtagtttggtgatgttta 10664655  T
Q  101 tatacctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataag 174  Q
     |||| | ||||| ||||||||||||| ||||||||||||||  |||| |||||||| |||||| |||||||||    
T  10664654 catactttgatagagataacacacgcaaccttttttgtgatgatagcaaatcatcaagcacctttaaggataag 10664581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 10362639 - 10362811
Alignment:
Q  1 catgttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttg 100  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||  || |||||||||     
T  10362639 catgttgtatcaggcaagcttttgattttactgaaggagatatctagataccgcaactgcaccaaatttccaattgaatctggtagcttggtgatgttta 10362738  T
Q  101 tatacctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataa 173  Q
     |||||  ||||| ||||||||||||| |||||||||||| || || | |||||||| || ||||||||||||    
T  10362739 cataccctgatagcgataacacacgcaaccttttttgtgacggtagaaaatcatcaatcaacttgaaggataa 10362811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 5 - 176
Target Start/End: Complemental strand, 10090014 - 10089843
Alignment:
Q  5 ttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgtata 104  Q
    |||||||||| ||||||| |||   |||||||||||||||||||||||||||  |||||||||| ||||||||||||||||  || |||||||||| |||    
T  10090014 ttgtatcaggtaagctttcgattccagtgaaggagatatctagataccgcaacagcaccaaattcccaattgaatctggtagcttggtgatgtttgcata 10089915  T
Q  105 cctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataagta 176  Q
    ||  ||||||||||||| ||||| ||||||||||||||| |||| ||||||||||||||| |||||||||||    
T  10089914 ccctgatagtgataacagacgcaaccttttttgtgatggtagcaaatcatcaaccaccttcaaggataagta 10089843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 10033228 - 10033055
Alignment:
Q  1 catgttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttg 100  Q
    |||||||||||||||||||||||||| ||| |  ||||||||| ||||||||| || ||||||||||| ||||||||||||||||  || |||||||||     
T  10033228 catgttgtatcaggcaagcttttgattttactcgaggagatatgtagataccgtaactgcaccaaatttccaattgaatctggtagcttggtgatgttta 10033129  T
Q  101 tatacctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataag 174  Q
    ||||||  ||||||||||| ||||||| || |||||||||||| |||| |||||||||||||||| ||||||||    
T  10033128 tataccatgatagtgataaaacacgcaaccgtttttgtgatggtagcaaatcatcaaccaccttggaggataag 10033055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 5 - 176
Target Start/End: Complemental strand, 10196897 - 10196726
Alignment:
Q  5 ttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgtata 104  Q
    |||||||||| ||||||| |||   |||||||||||||||||||||||||||   ||||||||| ||||||||||||||||  || |||||||||| |||    
T  10196897 ttgtatcaggtaagctttcgattccagtgaaggagatatctagataccgcaacaacaccaaattcccaattgaatctggtagcttggtgatgtttgcata 10196798  T
Q  105 cctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataagta 176  Q
    ||  ||||||||||||| ||||| ||||||||||||||| |||| ||||||||||||||| |||||||||||    
T  10196797 ccctgatagtgataacagacgcaaccttttttgtgatggtagcaaatcatcaaccaccttcaaggataagta 10196726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 10432889 - 10433060
Alignment:
Q  5 ttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgtata 104  Q
    |||||||||| ||||||| ||||| || |||||||||||||||||||||||| ||||||||||| ||||||||||||||||  || ||||||||| ||||    
T  10432889 ttgtatcaggtaagctttcgatgtaagagaaggagatatctagataccgcaactgcaccaaatttccaattgaatctggtagcttggtgatgtttttata 10432988  T
Q  105 cctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataagta 176  Q
    ||  ||||| |||||||||||||  ||||||||||| || |||| | ||||||  |||||||||||||||||    
T  10432989 ccctgatagcgataacacacgcaatcttttttgtgaaggcagcaaaccatcaagaaccttgaaggataagta 10433060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 10501808 - 10501640
Alignment:
Q  7 gtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgtatacc 106  Q
    ||||||||||||||||||||  |||| ||||||| ||||||||||| || |||||||||||||||||||||||||||||  || |||||||||||||||     
T  10501808 gtatcaggcaagcttttgattctagttaaggagagatctagatacctcatttgcaccaaattgccaattgaatctggtagcttggtgatgtttgtatact 10501709  T
Q  107 tcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataagt 175  Q
    | ||||| ||||||||||||| ||||||  ||  ||| |||| ||||||||||||||| | ||||||||    
T  10501708 tggatagcgataacacacgcaaccttttgagttttggtagcaaatcatcaaccaccttcatggataagt 10501640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 10678666 - 10678492
Alignment:
Q  1 catgttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttg 100  Q
    |||| ||||||||||||||||||||| | |||||| |||| ||||||||||||||| ||||||||||||||||||||||| ||||  || ||||| ||||    
T  10678666 catgatgtatcaggcaagcttttgatttcagtgaaagagagatctagataccgcaactgcaccaaattgccaattgaatcaggtagcttggtgatatttg 10678567  T
Q  101 tatacctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataagt 175  Q
    ||||| | || || ||||||||||||| ||||||  ||| ||| |||| |||||| || ||||||  ||||||||    
T  10678566 tatactttgacagcgataacacacgcaaccttttgagtgttggtagcaaatcatcgactaccttggtggataagt 10678492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 10185467 - 10185292
Alignment:
Q  1 catgttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttg 100  Q
    ||||||| ||||||||||||||  || | |||||| |||| ||||||||| ||||||||||| || |||||||||| ||| ||||  || |||||||||     
T  10185467 catgttgcatcaggcaagctttcaatttcagtgaatgagagatctagatatcgcaattgcactaacttgccaattgtatcaggtagcttggtgatgtttt 10185368  T
Q  101 tatacctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataagta 176  Q
    ||||| | ||||| |||||||| |||| ||||||  ||||||| | || |||||||||||||||||||||||||||    
T  10185367 tatactttgatagagataacacgcgcaaccttttgagtgatggtatcaaatcatcaaccaccttgaaggataagta 10185292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 13853528 - 13853650
Alignment:
Q  5 ttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgtata 104  Q
    |||||||| ||||||||||||| | |||  |||||| |||||||||||||| |||||| ||||||||||||| ||||||||  || ||||||||||||||    
T  13853528 ttgtatcatgcaagcttttgatttcagtataggagagatctagataccgcagttgcactaaattgccaattgtatctggtagcttggtgatgtttgtata 13853627  T
Q  105 cctcgatagtgataacacacgca 127  Q
    | | || |||||||| |||||||    
T  13853628 ctttgaaagtgataatacacgca 13853650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 181
Target Start/End: Complemental strand, 10528547 - 10528403
Alignment:
Q  37 gagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgtatacctcgatagtgataacacacgcagcctttttt 136  Q
    |||| ||||||||||||||| | |||||||||||||||| |||| ||||  || ||||| ||||||||| | || || ||||||||||||| ||||||      
T  10528547 gagagatctagataccgcaactacaccaaattgccaatttaatcaggtagcttggtgatatttgtatactttgacagcgataacacacgcaaccttttga 10528448  T
Q  137 gtgatgggagcagatcatcaaccaccttgaaggataagtagtttt 181  Q
    ||| ||| |||| ||||||||| ||||||  ||||||||| ||||    
T  10528447 gtgttggtagcaaatcatcaactaccttggtggataagtaatttt 10528403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 10078497 - 10078319
Alignment:
Q  1 catgttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatct---ggtaatttagtgatgt 97  Q
    ||||||| || |||||||||||  || | |||||| |||| ||||||||  ||||||||||| || |||||||||| |||    ||||  || |||||||    
T  10078497 catgttgcataaggcaagctttcaatttcagtgaatgagagatctagatttcgcaattgcactaacttgccaattgtatcatcaggtagcttggtgatgt 10078398  T
Q  98 ttgtatacctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataagta 176  Q
    || ||||| | ||||| |||||||| |||| ||||||  ||||||| |||| ||||||||| ||||| |||||||||||    
T  10078397 ttttatactttgatagagataacacgcgcaaccttttgagtgatggtagcaaatcatcaactaccttaaaggataagta 10078319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 11158862 - 11158989
Alignment:
Q  5 ttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgtata 104  Q
    |||||||||||||||||||||| | |||| | || | ||||||||| ||||| ||||||||| | ||||||||||| |||| |  ||||||||| |||||    
T  11158862 ttgtatcaggcaagcttttgatttcagtgtaagatagatctagatagcgcaactgcaccaaacttccaattgaatcaggtagtacagtgatgttagtata 11158961  T
Q  105 cctcgatagtgataacacacgcagcctt 132  Q
     || ||||  || |||||||||| ||||    
T  11158962 tcttgataacgacaacacacgcaacctt 11158989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 11129879 - 11129996
Alignment:
Q  10 tcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgtatacctcg 109  Q
    ||||||||||||||||| |||||| | || | ||||||||| ||||| ||||||||| | ||||||||||| |||| |  || |||||| ||||| || |    
T  11129879 tcaggcaagcttttgattttagtgcaagatagatctagatagcgcaactgcaccaaacttccaattgaatcaggtagtacagcgatgttagtatatcttg 11129978  T
Q  110 atagtgataacacacgca 127  Q
    ||| ||| ||||||||||    
T  11129979 ataatgacaacacacgca 11129996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 10078638 - 10078545
Alignment:
Q  1 catgttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaat-tgaatctggtaatttagtga 94  Q
    ||||||| |||||||||||||| ||| | ||||||||||| |||||||||| ||||||| || ||||| ||||| || | |||||||||||||||    
T  10078638 catgttgcatcaggcaagctttcgatttcagtgaaggagagatctagatactgcaattgtactaaatttccaatatgta-ctggtaatttagtga 10078545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 132
Target Start/End: Complemental strand, 10890525 - 10890403
Alignment:
Q  10 tcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgtatacctcg 109  Q
    ||||||||||||||||| || |||   || | ||||||||| ||||| ||||||||| |||||||||||||||| |   | ||||||||||||||  | |    
T  10890525 tcaggcaagcttttgatttttgtgtgagatagatctagatagcgcaactgcaccaaactgccaattgaatctggaagcattgtgatgtttgtatattttg 10890426  T
Q  110 atagtgataacacacgcagcctt 132  Q
    |||  ||||||||||||| ||||    
T  10890425 ataacgataacacacgcaacctt 10890403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 11147699 - 11147798
Alignment:
Q  5 ttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgtata 104  Q
    |||| |||||||||| |||||| | ||||   |||| ||||||||| ||||| ||||||||| |||||||||||||||| |   | ||||||||||||||    
T  11147699 ttgtgtcaggcaagcctttgatttgagtgtgagagagatctagatagcgcaactgcaccaaactgccaattgaatctggaagcattgtgatgtttgtata 11147798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 11245468 - 11245595
Alignment:
Q  5 ttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgtata 104  Q
    |||||| ||||||| ||||||| ||||||    ||| ||| ||||| ||||| ||||||||| | ||||||||||| ||||    ||||||||| |||||    
T  11245468 ttgtataaggcaagattttgattttagtgtgaaagagatcaagatagcgcaactgcaccaaactaccaattgaatcaggtagcacagtgatgttagtata 11245567  T
Q  105 cctcgatagtgataacacacgcagcctt 132  Q
     || ||||  ||||||||||||||||||    
T  11245568 tcttgataacgataacacacgcagcctt 11245595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 10185608 - 10185535
Alignment:
Q  1 catgttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaat 74  Q
    ||||||| ||| |||||||||| ||| | ||||||||||| |||||||||| ||||||| || ||||| |||||    
T  10185608 catgttgcatccggcaagctttcgatttcagtgaaggagagatctagatactgcaattgtactaaatttccaat 10185535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 13396714 - 13396650
Alignment:
Q  1 catgttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaa 65  Q
    ||||||||||| ||||||| |||||||| ||||  ||||| ||  |||||||||| |||||||||    
T  13396714 catgttgtatctggcaagcatttgatgtcagtgtgggagagattcagataccgcagttgcaccaa 13396650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 56447 - 56618
Alignment:
Q  5 ttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgtata 104  Q
    |||||||||||||||||| |||   ||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||  || ||||||||| ||||    
T  56447 ttgtatcaggcaagctttcgattccagtgaaggagatatctagataccgcaactgcaccgaatttccaattgaatctggtagcttggtgatgtttttata 56546  T
Q  105 cctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataagta 176  Q
    ||  ||||| ||||||||||||| |||||||||||| || || |  ||||||| ||||||||||||||||||    
T  56547 ccctgatagcgataacacacgcaaccttttttgtgacggtagaaagtcatcaatcaccttgaaggataagta 56618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 57256 - 57427
Alignment:
Q  5 ttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgtata 104  Q
    |||||||||| ||||||| |||   |||||||||||||||||||||||||||  |||||||||| ||||||||||||||||  || ||||||||| ||||    
T  57256 ttgtatcaggaaagctttcgattccagtgaaggagatatctagataccgcaacagcaccaaattcccaattgaatctggtagcttggtgatgtttttata 57355  T
Q  105 cctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataagta 176  Q
    ||  ||||| ||||||||||||| |||||||||||| || || |  ||||||| ||||||||||||||||||    
T  57356 ccctgatagcgataacacacgcaaccttttttgtgacggtagaaagtcatcaatcaccttgaaggataagta 57427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 26908112 - 26907983
Alignment:
Q  5 ttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgtata 104  Q
    ||||||||||||| |||||||| |||||||||||||  |||| ||||||||||||||||||||| ||||||||||||||||  || ||||||||||||||    
T  26908112 ttgtatcaggcaatcttttgattttagtgaaggagaggtctaaataccgcaattgcaccaaattaccaattgaatctggtagctttgtgatgtttgtata 26908013  T
Q  105 cctcgatagtgataacacacgcagcctttt 134  Q
      |  |||||||||||||||||| ||||||    
T  26908012 atttaatagtgataacacacgcaacctttt 26907983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 44956518 - 44956699
Alignment:
Q  1 catgttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttg 100  Q
    ||||| ||||||||||||||||||||  | || ||||||| |||  |||||||||| ||||||||||| |||||||||||||||| ||| |||||||||     
T  44956518 catgtggtatcaggcaagcttttgattcttgtaaaggagagatccggataccgcaaatgcaccaaatttccaattgaatctggtagtttggtgatgtttc 44956617  T
Q  101 tatacctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataagtagttttc 182  Q
    ||||    |||||||||||||  |||| ||||||  |||  || | || ||||||||||||||||| |||||||||||||||    
T  44956618 tataagctgatagtgataacatgcgcaaccttttgagtgtgggtatcaaatcatcaaccaccttgagggataagtagttttc 44956699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 11486259 - 11486089
Alignment:
Q  5 ttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgtata 104  Q
    ||||||||||||||||   ||| |||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||  |    ||||||||||||    
T  11486259 ttgtatcaggcaagctaccgatattagtggaggagagatctagatatcgcaattgcaccaaattgccaattgaatctggtagctcgaagatgtttgtata 11486160  T
Q  105 cctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataagt 175  Q
    | | ||||| ||||||||| ||| ||||||  ||| ||| |||| |||| |||||||||||  ||||||||    
T  11486159 ctttgatagcgataacacatgcaaccttttgagtgttggtagcaaatcaacaaccaccttggtggataagt 11486089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 176
Target Start/End: Original strand, 17851769 - 17851942
Alignment:
Q  3 tgttgtatcaggcaagcttttgatgttagtgaaggagatatctagataccgcaattgcaccaaattgccaattgaatctggtaatttagtgatgtttgta 102  Q
    ||||||||  |||||||||||||| ||||||||||||| ||||||||| || ||||||||||||||| ||| |||||||||||  || ||||||||| ||    
T  17851769 tgttgtattgggcaagcttttgattttagtgaaggagagatctagataacgtaattgcaccaaattggcaactgaatctggtagcttggtgatgttttta 17851868  T
Q  103 tacctcgatagtgataacacacgcagccttttttgtgatgggagcagatcatcaaccaccttgaaggataagta 176  Q
    ||  | ||||| ||||||||||||| ||||||  |   ||| || | ||||||||||||||||| |||||||||    
T  17851869 taatttgatagcgataacacacgcaaccttttgagctttggtaggaaatcatcaaccaccttgatggataagta 17851942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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