View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12948_low_1 (Length: 532)

Name: NF12948_low_1
Description: NF12948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12948_low_1
NF12948_low_1
[»] chr3 (1 HSPs)
chr3 (11-516)||(32598095-32598600)
[»] chr5 (2 HSPs)
chr5 (269-342)||(20626816-20626888)
chr5 (275-359)||(14433505-14433589)
[»] chr4 (5 HSPs)
chr4 (299-371)||(42624941-42625013)
chr4 (269-380)||(24959855-24959966)
chr4 (271-315)||(21090454-21090498)
chr4 (270-321)||(41703238-41703289)
chr4 (277-318)||(40745306-40745347)
[»] chr2 (1 HSPs)
chr2 (309-373)||(24578108-24578172)
[»] chr8 (1 HSPs)
chr8 (301-380)||(29149372-29149452)
[»] chr7 (2 HSPs)
chr7 (308-421)||(39104066-39104175)
chr7 (299-380)||(43200432-43200513)
[»] chr1 (1 HSPs)
chr1 (269-373)||(17409987-17410092)
[»] scaffold0045 (1 HSPs)
scaffold0045 (269-327)||(25540-25598)


Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 11 - 516
Target Start/End: Original strand, 32598095 - 32598600
Alignment:
Q  11 atgaaaatattaaagtaaaatcatgagacaaaacaaggtaatagaaagaagatgtaacccacatcaattattaatggaccgaatgcaagatatataagag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32598095 atgaaaatattaaagtaaaatcatgagacaaaacaaggtaatagaaagaagatgtaacccacatcaattattaatggaccgaatacaagatatataagag 32598194  T
Q  111 atgtaactcatatttcaaatgttttaaggtattgggtgaaagggtactatctcaatctcttggtggttttgaatcataagttcattgttgttccttattc 210  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32598195 atgtaactcatatttcaaatgttttaaggtattgggtggtagggtactgtctcaatctcttggtggttttgaatcataagttcattgttgtttcttattc 32598294  T
Q  211 tctccatgactttctaataagaatcctatgatgacacgaaagctgagatttaggaactgtccaataaattttatttgtagaagaggtctaaaacaaattt 310  Q
    |||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32598295 tctcaatgacttcctaataagaatcctataatgacacgaaagctgagatttaggaactgtccaataaattttatttgtagaagaggtctaaaacaaattt 32598394  T
Q  311 taatatatgagacatttttagtctatatatgaagcctttttgtttataatatctaaggaaaaatatttttgttttgttgggaagcttaatgcgagggctt 410  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32598395 taatatatgaggcatttttagtctatatatgaagcctttttgtttataatatctaaggaaaaatgtttttgttttgttgggaagcttaatgcgagggctt 32598494  T
Q  411 tagtagccttatcattgtactgatatccctaactctatgtatgtatgtgtacatgtcttactttgccgacttctaatggaacacaaacaagttgaggatg 510  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32598495 tagtagccttatcattgtaccgatatccctaactctatgtatgtatgtgtacatgtcttactttgccgacttctaatggaacacaaacaagttggggatg 32598594  T
Q  511 acatgg 516  Q
    ||||||    
T  32598595 acatgg 32598600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 20626816 - 20626888
Alignment:
Q  269 gtccaataaattttatttgtagaagaggtctaaaacaaattttaatatatgagacatttttagtctatatatga 342  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||| ||||||| | |||||||||| |||||||    
T  20626816 gtccaataaattttatttgtagacgagctttaaaacaaattttaa-atatgaggcttttttagtctgtatatga 20626888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 275 - 359
Target Start/End: Original strand, 14433505 - 14433589
Alignment:
Q  275 taaattttatttgtagaagaggtctaaaacaaattttaatatatgagacatttttagtctatatatgaagcctttttgtttataa 359  Q
    ||||||||||||||||  |||  |||||||| ||||||||||| |||||||||||||||| |||| ||  || ||||||||||||    
T  14433505 taaattttatttgtaggtgagacctaaaacatattttaatatacgagacatttttagtctgtatacgagaccattttgtttataa 14433589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 42625013 - 42624941
Alignment:
Q  299 taaaacaaattttaatatatgagacatttttagtctatatatgaagcctttttgtttataatatctaaggaaa 371  Q
    |||| |||| ||||||||||||||||||||||||||  |||||| | |||||||||||||| |||||| ||||    
T  42625013 taaagcaaaatttaatatatgagacatttttagtctgcatatgatggctttttgtttataaaatctaatgaaa 42624941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 380
Target Start/End: Original strand, 24959855 - 24959966
Alignment:
Q  269 gtccaataaattttatttgtagaagaggtctaaaacaaattttaatatatgagacatttttagtctatatatgaagcctttttgtttataatatctaagg 368  Q
    ||||||||| |||||||| |||  ||| ||||||||||||||||||||| |   | ||||||||  ||||||||   |||||| ||||||| |||||| |    
T  24959855 gtccaataacttttatttttaggtgagttctaaaacaaattttaatatacggagcctttttagttgatatatgagatctttttatttataaaatctaatg 24959954  T
Q  369 aaaaatattttt 380  Q
    ||||||||||||    
T  24959955 aaaaatattttt 24959966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 21090498 - 21090454
Alignment:
Q  271 ccaataaattttatttgtagaagaggtctaaaacaaattttaata 315  Q
    ||||||| ||||||||||||| |||||||||| ||||||||||||    
T  21090498 ccaataatttttatttgtagatgaggtctaaatcaaattttaata 21090454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 41703289 - 41703238
Alignment:
Q  270 tccaataaattttatttgtagaagaggtctaaaacaaattttaatatatgag 321  Q
    |||||||| ||||||||||||  || | ||||||||||||||||||||||||    
T  41703289 tccaataagttttatttgtaggtgatgcctaaaacaaattttaatatatgag 41703238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 40745347 - 40745306
Alignment:
Q  277 aattttatttgtagaagaggtctaaaacaaattttaatatat 318  Q
    ||||||||||||||  |||||||||||||| |||||||||||    
T  40745347 aattttatttgtaggtgaggtctaaaacaagttttaatatat 40745306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 24578172 - 24578108
Alignment:
Q  309 tttaatatatgagacatttttagtctatatatgaagcctttttgtttataatatctaaggaaaaa 373  Q
    ||||||||||||| |||||||||| | ||||||||| |||||||||||||| |||||| ||||||    
T  24578172 tttaatatatgaggcatttttagtttgtatatgaagtctttttgtttataaaatctaatgaaaaa 24578108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 380
Target Start/End: Original strand, 29149372 - 29149452
Alignment:
Q  301 aaacaaattttaatatatgagacatttttagtctatatatgaagcctttttgtttat-aatatctaaggaaaaatattttt 380  Q
    ||||||||||||||| ||||||| |||||| | | ||||||| |||||||| ||||| || |||||| |||||||||||||    
T  29149372 aaacaaattttaataaatgagacctttttaatttgtatatgaggcctttttatttataaaaatctaatgaaaaatattttt 29149452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 421
Target Start/End: Original strand, 39104066 - 39104175
Alignment:
Q  308 ttttaatatatgagacatttttagtctatatatgaagcctttttgtttataatatctaaggaaaaatatttttgttttgttgggaagcttaatgcgaggg 407  Q
    |||||||||||| |   ||||| |||| ||||||| || ||||||||||||| || ||| ||||||||||    ||||||||| | || ||| |||||||    
T  39104066 ttttaatatatgtggtcttttttgtctgtatatgaggcatttttgtttataaaatataatgaaaaatatt----ttttgttggtaggcctaaagcgaggg 39104161  T
Q  408 ctttagtagcctta 421  Q
    ||||||||||||||    
T  39104162 ctttagtagcctta 39104175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 380
Target Start/End: Complemental strand, 43200513 - 43200432
Alignment:
Q  299 taaaacaaattttaatatatgagacatttttagtctatatatgaagcctttttgtttataatatctaaggaaaaatattttt 380  Q
    ||||| ||||||||||||||||||  |||||||||  || |||| |  ||||||||||||| || ||| |||||||| ||||    
T  43200513 taaaataaattttaatatatgagatttttttagtccgtaaatgaggaatttttgtttataaaatataatgaaaaataatttt 43200432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 373
Target Start/End: Complemental strand, 17410092 - 17409987
Alignment:
Q  269 gtccaataaattttatttgtagaagaggtctaaaacaaattttaatatatgagacatttttagtctatatatga-agcctttttgtttataatatctaag 367  Q
    ||||||||| |||||||| |||  ||| |||| |||||||||||||||||| ||  ||||| ||| | ||||||  | |||||||||||||| ||||||     
T  17410092 gtccaataatttttatttttaggtgagatctataacaaattttaatatatgggatctttttggtcgacatatgagggtctttttgtttataaaatctaat 17409993  T
Q  368 gaaaaa 373  Q
    ||||||    
T  17409992 gaaaaa 17409987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 327
Target Start/End: Original strand, 25540 - 25598
Alignment:
Q  269 gtccaataaattttatttgtagaagaggtctaaaacaaattttaatatatgagacattt 327  Q
    ||||||||| ||||| | ||| |  ||||| ||||||||||||||||||||||||||||    
T  25540 gtccaataatttttaatagtaaataaggtccaaaacaaattttaatatatgagacattt 25598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University