View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12948_low_5 (Length: 342)

Name: NF12948_low_5
Description: NF12948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12948_low_5
NF12948_low_5
[»] chr1 (12 HSPs)
chr1 (1-342)||(51756506-51756847)
chr1 (1-342)||(51762682-51763030)
chr1 (1-310)||(51854932-51855245)
chr1 (4-315)||(51858586-51858901)
chr1 (233-304)||(51782790-51782861)
chr1 (231-289)||(51407546-51407604)
chr1 (221-306)||(51832362-51832447)
chr1 (99-153)||(51221064-51221118)
chr1 (233-307)||(51381444-51381518)
chr1 (96-198)||(51381300-51381403)
chr1 (221-310)||(51221193-51221282)
chr1 (245-306)||(51829766-51829827)
[»] chr6 (5 HSPs)
chr6 (96-310)||(4182846-4183067)
chr6 (96-310)||(4743690-4743911)
chr6 (243-293)||(19119065-19119115)
chr6 (243-293)||(19126359-19126409)
chr6 (244-294)||(24417486-24417536)
[»] chr3 (15 HSPs)
chr3 (243-293)||(23197014-23197064)
chr3 (233-294)||(2492083-2492144)
chr3 (233-294)||(2631358-2631419)
chr3 (233-302)||(7442966-7443035)
chr3 (233-302)||(43991953-43992022)
chr3 (246-302)||(9608346-9608402)
chr3 (218-296)||(1891038-1891116)
chr3 (243-297)||(3754598-3754652)
chr3 (243-296)||(2696731-2696784)
chr3 (243-296)||(4142133-4142186)
chr3 (243-296)||(4157943-4157996)
chr3 (243-296)||(7432053-7432106)
chr3 (246-295)||(13498224-13498273)
chr3 (219-295)||(783774-783850)
chr3 (243-295)||(2442039-2442091)
[»] chr2 (3 HSPs)
chr2 (267-302)||(33038153-33038188)
chr2 (233-301)||(11237687-11237755)
chr2 (243-295)||(36577366-36577418)
[»] scaffold0044 (1 HSPs)
scaffold0044 (244-301)||(89137-89194)
[»] chr5 (2 HSPs)
chr5 (243-296)||(23766861-23766914)
chr5 (243-296)||(23816709-23816762)
[»] chr4 (2 HSPs)
chr4 (243-296)||(20019771-20019824)
chr4 (243-291)||(20016184-20016232)


Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 51756506 - 51756847
Alignment:
Q  1 tcctaatactgagataaaggtgatgtcaaactctcaaagtggacttctggaatgcaaacttcaggtatcatcagatcatgaatgttgttttgggcttcag 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51756506 tcctaatactgagataaaggtgatatcaaactctcaaagtggacttctggaatgcaaacttcaggtatcatcagatcatgaatgttgttttgggcttcag 51756605  T
Q  101 gaatcttaaaagtatcatttatggaatcatagaaagccaaactaaattt-cccctcttcacaaaatacattagcacttggtcatcctcagaaatatataa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  51756606 gaatcttaaaagtatcatttatggaatcatagaaagccaaactaaattttcccctcttcacaaaatacatcagcacttggtcatcctcagaaatatataa 51756705  T
Q  200 tggtttggtatagatataatgatctcccatctgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaa 299  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51756706 tggtttggtatagatataatgatctcccatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaa 51756805  T
Q  300 aacttgtcactttgagnnnnnnntgcacaaacaatccctcaac 342  Q
    ||||||||||||||||       ||||||||||||||||||||    
T  51756806 aacttgtcactttgag-aaaaaatgcacaaacaatccctcaac 51756847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 51762682 - 51763030
Alignment:
Q  1 tcctaatactgagataaaggtgatgtcaaactctcaaagtggacttctggaatgcaaacttcaggtatcatcagatcatgaatgttgttttgggcttcag 100  Q
    |||||||| ||| | ||||||||| |||||||||||| || ||||||  ||||||| | |   ||||||| | |||||||||||||||||||   || ||    
T  51762682 tcctaatattgaaaaaaaggtgatatcaaactctcaacgtagacttccagaatgcagaataatggtatcaacggatcatgaatgttgttttgaattttag 51762781  T
Q  101 gaatcttaaaagtatcatttatggaatcatagaaagccaaactaaatttcccc-tcttcacaaaatacattagcacttggtcatcctcagaaatatataa 199  Q
    |||||||||||||||||||||||||| |||||| | ||||||||||||||||| |||||| || |||||| |||||||||||||| ||||| ||||||||    
T  51762782 gaatcttaaaagtatcatttatggaaccatagacaaccaaactaaatttccccatcttcagaatatacatcagcacttggtcatcttcagatatatataa 51762881  T
Q  200 tggtttggt------atagatataatgatctcccatctgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaca 293  Q
    ||  |||||      ||| | |  | ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  51762882 tgccttggttaaggaataaaaaccacgatctcctatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaaa 51762981  T
Q  294 tcaaaaaacttgtcactttgagnnnnnnntgcacaaacaatccctcaac 342  Q
    | | ||||  ||||||| | ||       ||||||||||||||||||||    
T  51762982 taagaaaagctgtcactattagaaaaaaatgcacaaacaatccctcaac 51763030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 51855245 - 51854932
Alignment:
Q  1 tcctaatactgagataaaggtgatgtcaaactctcaaagtggacttctggaatgcaaacttcaggtatcatcagatcatgaatgttgttttgggcttcag 100  Q
    ||||||| |||||| ||| ||||| ||||||| ||||||| || |||||||| | |  |||| ||||  |   ||||||| || ||||||||   | |||    
T  51855245 tcctaatcctgagaaaaatgtgatatcaaactttcaaagtagatttctggaaggtaggcttctggtacga---gatcatggatattgttttgaattgcag 51855149  T
Q  101 gaatcttaaaagtatcatttatggaatcatagaaagccaaactaaatttcccc-tcttcacaaaatacattagcacttggtcatcctcagaaatatataa 199  Q
    ||||||| ||||||||||  ||||||||||||| |||||||||||| |||||| |||| | ||||||| | |||||||||||||| ||||| ||||||||    
T  51855148 gaatcttcaaagtatcatggatggaatcatagacagccaaactaaacttccccatcttgaaaaaatacgtcagcacttggtcatcttcagatatatataa 51855049  T
Q  200 tggtttggtatagatataatga------tctcccatctgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaca 293  Q
    |||||||||||||||||||  |       ||||||| |||||||||| |||||||||||||||||||| | ||||||||||||| |||||||||||||||    
T  51855048 tggtttggtatagatataacaaccacagcctcccatttgaggaacacataacaatttagtccaagattctacatttccatattctttcatgatccaaaca 51854949  T
Q  294 tcaaaaaacttgtcact 310  Q
    ||| ||||||| |||||    
T  51854948 tcagaaaacttctcact 51854932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 4 - 315
Target Start/End: Complemental strand, 51858901 - 51858586
Alignment:
Q  4 taatactgagataaaggtgatgtcaaactctcaaagtggacttctggaatgcaaacttcaggtatcatcagatcatgaatgttgttttgggcttcaggaa 103  Q
    ||||||||||| | ||||||| ||||| | |||| || ||||||||||| | | |||||   | | | ||||||||| || ||||||||   ||||||||    
T  51858901 taatactgagaaagaggtgatatcaaagtttcaatgtagacttctggaaggtagacttc---ttttaccagatcatggatattgttttgaatttcaggaa 51858805  T
Q  104 tcttaaaagtatcatttatggaatcatagaaagccaaactaaatttccc-ctcttcacaaaatacattagcacttggtcatcctcagaaatatataatgg 202  Q
    |||| || |||||||| ||||||||||||| |||||| ||||||||||| ||||| | |||||| || |||| | || |||| ||||| |||||||||      
T  51858804 tcttcaatgtatcattaatggaatcatagacagccaacctaaatttccctctcttgaaaaaatatatcagcattaggccatcttcagatatatataatac 51858705  T
Q  203 tttggtatagatataatgatc------tcccatctgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 296  Q
    ||||||||||||||||  | |      |||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  51858704 tttggtatagatataacaaccacaacctcccatttgaggaacacttaacaatttagtccaagattctacatttccatattccttcatgatccaaacatca 51858605  T
Q  297 aaaaacttgtcactttgag 315  Q
     ||||||||||||| ||||    
T  51858604 gaaaacttgtcactatgag 51858586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 51782861 - 51782790
Alignment:
Q  233 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaactt 304  Q
    |||||||||||| |||||| ||||||||||| ||||||||||||||||||| |||||||||||| |||||||    
T  51782861 aggaacacttaataatttattccaagattgttcatttccatattccttcataatccaaacatcataaaactt 51782790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 51407546 - 51407604
Alignment:
Q  231 tgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatcca 289  Q
    ||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||    
T  51407546 tgaggaacacttaacaatttagtccaagactgttcattcccatattccttcataatcca 51407604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 221 - 306
Target Start/End: Complemental strand, 51832447 - 51832362
Alignment:
Q  221 atctcccatctgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgt 306  Q
    |||| |||| |||||||  || ||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||  |||||||||    
T  51832447 atcttccatatgaggaatgctcaacaatttagtccaagattgttcatttccatattctttcattatccaaatatcggaaaacttgt 51832362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 51221064 - 51221118
Alignment:
Q  99 aggaatcttaaaagtatcatttatggaatcatagaaagccaaactaaatttcccc 153  Q
    |||||||||||| |||| ||||||||||||||||| | |||||||||||||||||    
T  51221064 aggaatcttaaatgtattatttatggaatcatagataaccaaactaaatttcccc 51221118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 51381444 - 51381518
Alignment:
Q  233 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtc 307  Q
    ||||| ||| ||||||||||||||||| | | ||||||||||||| ||||| ||||||| |||| ||||||||||    
T  51381444 aggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatcagaaaacttgtc 51381518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 198
Target Start/End: Original strand, 51381300 - 51381403
Alignment:
Q  96 ttcaggaatcttaaaagtatcatttatggaatcatagaaagccaaactaaatttcccc-tcttcacaaaatacattagcacttggtcatcctcagaaata 194  Q
    |||||||||||| |||||||||||| |||||||||||| |  |||||| ||||||||| |||| | ||| | ||| |  ||||||||||| || ||||||    
T  51381300 ttcaggaatcttcaaagtatcatttttggaatcatagacaagcaaactgaatttccccatctttagaaactgcatcaaaacttggtcatcttccgaaata 51381399  T
Q  195 tata 198  Q
    ||||    
T  51381400 tata 51381403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 310
Target Start/End: Original strand, 51221193 - 51221282
Alignment:
Q  221 atctcccatctgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcact 310  Q
    ||||| ||| |||||||| | ||||||| |||||||||| | | |||| || ||||| ||||| |||||||||||| ||||| |||||||    
T  51221193 atctctcatgtgaggaacccgtaacaatatagtccaagaattttcattcccgtattcattcattatccaaacatcagaaaacatgtcact 51221282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 51829827 - 51829766
Alignment:
Q  245 caatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgt 306  Q
    ||||||| ||||||||||  ||||||||||||| ||||| ||||||||||| ||||| ||||    
T  51829827 caatttaatccaagattggtcatttccatattctttcattatccaaacatcgaaaaagttgt 51829766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 151; Significance: 7e-80; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 96 - 310
Target Start/End: Original strand, 4182846 - 4183067
Alignment:
Q  96 ttcaggaatcttaaaagtatcatttatggaatcatagaaagccaaactaaatttcc-cctcttcacaaaatacattagcacttggtcatcctcagaaata 194  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||||||||| ||||||||||    
T  4182846 ttcaggaatcttataagtatcatttatggaatcatagacagccaaactaaatttcctcctcttcataaaatacatcagcacttggtcatgctcagaaata 4182945  T
Q  195 tataatggtttggt------atagatataatgatctcccatctgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatcc 288  Q
    ||||||||||| ||      ||| ||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4182946 tataatggtttagttaagatatatatataagcatctcccatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatcc 4183045  T
Q  289 aaacatcaaaaaacttgtcact 310  Q
    ||||||||||||||||||||||    
T  4183046 aaacatcaaaaaacttgtcact 4183067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 96 - 310
Target Start/End: Original strand, 4743690 - 4743911
Alignment:
Q  96 ttcaggaatcttaaaagtatcatttatggaatcatagaaagccaaactaaatttcc-cctcttcacaaaatacattagcacttggtcatcctcagaaata 194  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||||||||| ||||||||||    
T  4743690 ttcaggaatcttataagtatcatttatggaatcatagacagccaaactaaatttcctcctcttcataaaatacatcagcacttggtcatgctcagaaata 4743789  T
Q  195 tataatggtttggt------atagatataatgatctcccatctgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatcc 288  Q
    ||||||||||| ||      ||| ||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4743790 tataatggtttagttaagatatatatataagcatctcccatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatcc 4743889  T
Q  289 aaacatcaaaaaacttgtcact 310  Q
    ||||||||||||||||||||||    
T  4743890 aaacatcaaaaaacttgtcact 4743911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 19119115 - 19119065
Alignment:
Q  243 aacaatttagtccaagattgtccatttccatattccttcatgatccaaaca 293  Q
    ||||||||||||||||| | | ||||||||||||||||||| | |||||||    
T  19119115 aacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19119065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 19126409 - 19126359
Alignment:
Q  243 aacaatttagtccaagattgtccatttccatattccttcatgatccaaaca 293  Q
    ||||||||||||||||| | | ||||||||||||||||||| | |||||||    
T  19126409 aacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19126359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 24417486 - 24417536
Alignment:
Q  244 acaatttagtccaagattgtccatttccatattccttcatgatccaaacat 294  Q
    |||||||||||||||||| |  |||||||||||| ||||| ||||||||||    
T  24417486 acaatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 23197064 - 23197014
Alignment:
Q  243 aacaatttagtccaagattgtccatttccatattccttcatgatccaaaca 293  Q
    ||||||||||||||||||| | ||||||||||||||||||| | |||||||    
T  23197064 aacaatttagtccaagattcttcatttccatattccttcatcagccaaaca 23197014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 2492144 - 2492083
Alignment:
Q  233 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacat 294  Q
    |||||||||  |||||||||||||||| | || ||||||||| |||||||| ||||||||||    
T  2492144 aggaacactatacaatttagtccaagactctcgatttccatactccttcataatccaaacat 2492083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 2631419 - 2631358
Alignment:
Q  233 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacat 294  Q
    |||||||||  |||||||||||||||| | |  |||||||||||||||||| ||||||||||    
T  2631419 aggaacactgcacaatttagtccaagactcttgatttccatattccttcataatccaaacat 2631358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 7442966 - 7443035
Alignment:
Q  233 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaac 302  Q
    |||||||||  |||| ||||||||||| | |  ||||||||| ||||||||||||||||||| |||||||    
T  7442966 aggaacactatacaacttagtccaagactcttgatttccatactccttcatgatccaaacattaaaaaac 7443035  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 43992022 - 43991953
Alignment:
Q  233 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaac 302  Q
    |||||||||  ||||||| |||||||| | |  |||||||||||||||||| ||||||||||| ||||||    
T  43992022 aggaacactatacaatttggtccaagactctatatttccatattccttcataatccaaacatccaaaaac 43991953  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 9608346 - 9608402
Alignment:
Q  246 aatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaac 302  Q
    |||||||||||||| | |  |||||||||||||||||| | ||||||||||||||||    
T  9608346 aatttagtccaagaatctatatttccatattccttcataacccaaacatcaaaaaac 9608402  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 296
Target Start/End: Original strand, 1891038 - 1891116
Alignment:
Q  218 atgatctcccatctgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 296  Q
    |||||||| ||| | || ||||||  |||||||||||||||| | |  |||||||| ||||||||| ||||||||||||    
T  1891038 atgatctcgcatgtaagaaacactatacaatttagtccaagagtctttatttccatgttccttcataatccaaacatca 1891116  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 297
Target Start/End: Complemental strand, 3754652 - 3754598
Alignment:
Q  243 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaa 297  Q
    ||||||||||||||||| | |  |||||||||||||||||| | |||||||||||    
T  3754652 aacaatttagtccaagactctttatttccatattccttcataacccaaacatcaa 3754598  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 2696731 - 2696784
Alignment:
Q  243 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 296  Q
    ||||||||| ||||||| | |  |||||||||||||||||| ||||||||||||    
T  2696731 aacaatttaatccaagactctttatttccatattccttcataatccaaacatca 2696784  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 4142133 - 4142186
Alignment:
Q  243 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 296  Q
    ||||||||||||||||| | |  |||||||||||||||||| | ||||||||||    
T  4142133 aacaatttagtccaagactctttatttccatattccttcataagccaaacatca 4142186  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 4157943 - 4157996
Alignment:
Q  243 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 296  Q
    ||||||||||||||||| | |  |||||||||||||||||| | ||||||||||    
T  4157943 aacaatttagtccaagactctttatttccatattccttcataagccaaacatca 4157996  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 7432053 - 7432106
Alignment:
Q  243 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 296  Q
    |||||||||||||| |||| |  ||||||||||||||||||  |||||||||||    
T  7432053 aacaatttagtccacgattctttatttccatattccttcatactccaaacatca 7432106  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 13498273 - 13498224
Alignment:
Q  246 aatttagtccaagattgtccatttccatattccttcatgatccaaacatc 295  Q
    |||||||||||||| | |  |||||||||||||||||| |||||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 295
Target Start/End: Original strand, 783774 - 783850
Alignment:
Q  219 tgatctcccatctgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatc 295  Q
    ||||||||||| | ||||||| |  ||||||||||||| |  | |  |||||||||||||||||| |||||||||||    
T  783774 tgatctcccatgtaaggaacagtatacaatttagtccatggctttgtatttccatattccttcataatccaaacatc 783850  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 2442091 - 2442039
Alignment:
Q  243 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatc 295  Q
    ||||||||||||||||| | |  ||||||||| |||||||| |||||||||||    
T  2442091 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 2442039  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 302
Target Start/End: Complemental strand, 33038188 - 33038153
Alignment:
Q  267 tttccatattccttcatgatccaaacatcaaaaaac 302  Q
    ||||||||||||||||| ||||||||||||||||||    
T  33038188 tttccatattccttcataatccaaacatcaaaaaac 33038153  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 11237755 - 11237687
Alignment:
Q  233 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaa 301  Q
    ||||||||  |||||||||||||||| || || ||||||||| |||| ||| | ||||||||| |||||    
T  11237755 aggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatcgaaaaa 11237687  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 36577418 - 36577366
Alignment:
Q  243 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatc 295  Q
    ||||||||| ||||||| | |  |||||||||||||||||| |||||||||||    
T  36577418 aacaatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

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Target: scaffold0044 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 89194 - 89137
Alignment:
Q  244 acaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaa 301  Q
    |||||||||||||||| | |  |||||||||||||||||| | ||||| |||||||||    
T  89194 acaatttagtccaagactctttatttccatattccttcataacccaaatatcaaaaaa 89137  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 23766861 - 23766914
Alignment:
Q  243 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 296  Q
    ||||||||||||||||| | |  |||||||||||| ||||| ||||||||||||    
T  23766861 aacaatttagtccaagactctttatttccatattctttcataatccaaacatca 23766914  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 23816709 - 23816762
Alignment:
Q  243 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 296  Q
    ||||||||||||||||| | |  |||||||||||| ||||| ||||||||||||    
T  23816709 aacaatttagtccaagactctttatttccatattctttcataatccaaacatca 23816762  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 20019771 - 20019824
Alignment:
Q  243 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 296  Q
    ||||||||||||||||| | |  | |||||||||||||||||| ||||||||||    
T  20019771 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatca 20019824  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 20016184 - 20016232
Alignment:
Q  243 aacaatttagtccaagattgtccatttccatattccttcatgatccaaa 291  Q
    ||||||||||||||||| | |  | ||||||||||||||||||||||||    
T  20016184 aacaatttagtccaagactcttgaattccatattccttcatgatccaaa 20016232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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