View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12948_low_6 (Length: 248)
Name: NF12948_low_6
Description: NF12948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12948_low_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 45122857 - 45122617
Alignment:
| Q |
8 |
attatactagtaacaaacactaacaagaacttgaaaaaggtttattgagagtgccttacaacaaattcagggatcattttaaaagtttactcaaatgtat |
107 |
Q |
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| T |
45122857 |
attatactagtaccaaacactaacaagaacttgaaaaaggtttattgagagtgccttacaacaaattcagggatcattttaaaagtttactcaaatgtat |
45122758 |
T |
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| Q |
108 |
ttaaaaacttgatcattgttatatactttgcatgttttatgacattgcaattaaatgtattgaaattcttatatacatcgcatgttatatgacaatgcaa |
207 |
Q |
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| T |
45122757 |
ttaaaaacttgatcattcttatatactttgcatgttttatgacattgcaattaaatgtattgaaattcttatatacatcgcatgttatatgacaatgcaa |
45122658 |
T |
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| Q |
208 |
ttaaatgtattgaaatataaaagataataagtccaatatat |
248 |
Q |
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| T |
45122657 |
ttaaatgtattgaaatataaaagataataagtccaatatat |
45122617 |
T |
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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 45121969 - 45121904
Alignment:
| Q |
172 |
attcttatatacatcgcatgttatatgacaatgcaattaaatgtattgaaatataaaagataataa |
237 |
Q |
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| T |
45121969 |
attcttatatacattgcatgttatatgacattgtaattaaacgtattaaaatataaaagataataa |
45121904 |
T |
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