View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12948_low_8 (Length: 232)
Name: NF12948_low_8
Description: NF12948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12948_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 9178899 - 9178701
Alignment:
| Q |
17 |
caaaggctaaaattacctcattggtgacaacattgaattaagcatcaattaacaactagacacacacctcaacataatagagttgttgaactaaagagtg |
116 |
Q |
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| T |
9178899 |
caaaggccaagattacctcattggtgacaacattgaattaagcatcaattaacaactagacatacacctcaacataatagagttgttgaactaaagagtg |
9178800 |
T |
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| Q |
117 |
gagcaaccatagacatgatgagatgcatgttgaaagaaaaacaaatgcctatggtacaaatgctactgagaaaaataaaacttagaagatgataaactt |
215 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9178799 |
gagcaatcatagacatgatgagatgcatgttgaaagaaaaacaaatgcctatggtacaaatgctactgagaaaaataaaacttagaagatgataaactt |
9178701 |
T |
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