View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12949_low_1 (Length: 600)
Name: NF12949_low_1
Description: NF12949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12949_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 3e-59; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 33461388 - 33461243
Alignment:
| Q |
21 |
tttctaacaagtggtatcagagcggtctttgttttattgagattatttgtatgatgattcatgcttaagtttgtaa---taatttagttctttgaattat |
117 |
Q |
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| T |
33461388 |
tttctaacaa-tggtatcagagcggtctttgttttattgagattatttgtatgatgattcatgcttaagtttgtaatggtaatttagttctttgaattat |
33461290 |
T |
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| Q |
118 |
aaacaaacccttttatttttgtttcgtcgtagcacatcagtaaaatt |
164 |
Q |
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| T |
33461289 |
aaacgaacccttttatttttgtttcgtcgtagtacatcagtaaaatt |
33461243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 327 - 448
Target Start/End: Complemental strand, 33461027 - 33460905
Alignment:
| Q |
327 |
aaaatacgtatcatgtgtccattatgatttcttttattaacctgttagtattgaattgattaaagcatttgagactt-ttttgttgttgtcttgttttgt |
425 |
Q |
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| T |
33461027 |
aaaatacgtatcatgtgtccattatgatttcttttattaacatgttagtattgaattgattaaagcatttgagactttttttgttgttgtcttgttttgt |
33460928 |
T |
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| Q |
426 |
tgcatctagaaacgaatcgttat |
448 |
Q |
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| T |
33460927 |
tgcatctagaaacgaatcattat |
33460905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 433 - 585
Target Start/End: Complemental strand, 33460881 - 33460728
Alignment:
| Q |
433 |
agaaacgaatcgttattctcttatttgggactatttttggtttcaacaaattgnnnnnnnnnnnnaccttgtc-ccgtgagttatgggacactaagggaa |
531 |
Q |
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| T |
33460881 |
agaaacgaatcattattctcttatttgggactatttttggtttcaacaaattgttttttatttttaccttgtcaccgttagttatgggacacaaagggaa |
33460782 |
T |
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| Q |
532 |
attcgattctatatttcttttcatctagattgattttgagtttgtagagcattt |
585 |
Q |
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| T |
33460781 |
attcgattctatatttcttttcatctagattgattttgagtttgtagagcattt |
33460728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 245 - 344
Target Start/End: Complemental strand, 33461147 - 33461047
Alignment:
| Q |
245 |
gcaattgcagttttattacgttaaattgaatatttttatacgagcatacatttagcatcaattcga-nnnnnnnncctgggttaaaatacgtatcatgtg |
343 |
Q |
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| T |
33461147 |
gcaattgcagttttattacgttaaattgaatatttttatacgagcatacgtttagcatcaattcgatttttttttcctgggttaaaatacgtatcatgtg |
33461048 |
T |
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| Q |
344 |
t |
344 |
Q |
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| T |
33461047 |
t |
33461047 |
T |
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