View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1294_high_1 (Length: 476)
Name: NF1294_high_1
Description: NF1294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1294_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 214 - 447
Target Start/End: Original strand, 5033505 - 5033743
Alignment:
| Q |
214 |
aagactatttcttcttgtatgagctgagaattgttttagctaatcactaggttaaggttgaaattatctgacacttagccatacgagtctctcatagact |
313 |
Q |
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| T |
5033505 |
aagactatttcttcttgtatgagctaagaattgttttagctaatcactaggttaaggttgaaattatctgacacttggccatacgagtctctcatagaca |
5033604 |
T |
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| Q |
314 |
agttttctacaacagattttaactacataaactaaatttcacctttt-atatgca----cctttttcatggcaatgacacattgatttttatgagttgca |
408 |
Q |
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| T |
5033605 |
agttttctacaacagattttaactacataaactaaatttcaccttttaatatgcaattctatttttcatggcaatgacacattgatttttatgagttgca |
5033704 |
T |
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| Q |
409 |
attaaggtgtttgatgaaagacttgaggagagtgatttc |
447 |
Q |
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| T |
5033705 |
attaaggtgtttgatgaaagacttgaggagagtgatttc |
5033743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 5033371 - 5033487
Alignment:
| Q |
110 |
cctctcgaattcaaggcatatttttgttaattatgttttggtgagtccaataatcaagagtttgttccagagaaagtttagtaatgtctcgcagcatgag |
209 |
Q |
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| T |
5033371 |
cctctcgaattcaaggcatatttttgttaattatgttttggtgagtccaataatcaagagtttgttccggagaaagtttagtaatgtctcgcagcatgag |
5033470 |
T |
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| Q |
210 |
tataaagactatttctt |
226 |
Q |
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| T |
5033471 |
tataaagactatttctt |
5033487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 5033440 - 5033487
Alignment:
| Q |
3 |
gagaaagtttagtaatgtctcgcagcatgagtataaagactatttctt |
50 |
Q |
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| T |
5033440 |
gagaaagtttagtaatgtctcgcagcatgagtataaagactatttctt |
5033487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 5026413 - 5026368
Alignment:
| Q |
316 |
ttttctacaacagattttaactacataaactaaatttcacctttta |
361 |
Q |
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| T |
5026413 |
ttttctacaacagatgttaattacataaaataaatttcacctttta |
5026368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 5032976 - 5033022
Alignment:
| Q |
73 |
tttatttcaagggcactcacataattcaaacctcatacctctcgaat |
119 |
Q |
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| T |
5032976 |
tttatttcaagggcactcgcataattcaaactcgatacctctcgaat |
5033022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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