View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1294_high_2 (Length: 466)
Name: NF1294_high_2
Description: NF1294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1294_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 5 - 321
Target Start/End: Original strand, 15756310 - 15756624
Alignment:
| Q |
5 |
aaaataaggttgacaattttcgttgtcgacaaaattatcttgtagttactatagatatttcaaagtatcaaaatagaaagaataaatttatctatcaagt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15756310 |
aaaataaggttgacaattttcgttgtcgacaaaattatcttgtagttactatagata-ttcaaagtatcaaaatagaaagaataaatttatcaatcaagt |
15756408 |
T |
|
| Q |
105 |
gata-attttttgtcttgtttctacatatttttaacaaatacatttattagctaaatataatatatatnnnnnnnngtttaaataagcaaatggtccgtg |
203 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| | | | ||| |||||||||||| | ||||| |
|
|
| T |
15756409 |
gatattttttttgtctt-tttctacatatttttaacaaatagatttattaactaaatataaaaaaaa---aaaaaggttgaaataagcaaatagaccgtg |
15756504 |
T |
|
| Q |
204 |
caaatatagcttggttggatgtcctt--nnnnnnnntggaaaataccatggaagctacttttttgatgatttggcacattttttacgatgtggcttacat |
301 |
Q |
| |
|
| ||||| ||||||| |||||||||| || |||||||||| | || ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15756505 |
ccaatatggcttggtcggatgtcctttaaaaaaaaatgaaaaataccattggagttacttttttgatgatttggcacattttttacgatgtggcgtacat |
15756604 |
T |
|
| Q |
302 |
atattggttaagtaacattt |
321 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
15756605 |
atattggttaagtaacattt |
15756624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 258 - 457
Target Start/End: Original strand, 15756676 - 15756875
Alignment:
| Q |
258 |
acttttttgatgatttgg-cacattttttacgatgtggcttacatatattggttaagtaacattttactcatttttacaattnnnnnnnttgcattatat |
356 |
Q |
| |
|
||||| |||||||||||| ||||||||| | |||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
15756676 |
actttcttgatgatttgggcacatttttgatgatgtggcgtacatatattggttaagtaacatttgactcatttttacaat-aaaaaaattgcattatat |
15756774 |
T |
|
| Q |
357 |
caaaatataattgtttaannnnnnnctcatattttgtagacataaaatattttaattaaaacatcaaaccctaaaatgtatgccctt-tttaatcttcat |
455 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||| |
|
|
| T |
15756775 |
caaaatataattgtttaacttttt-ctcatattttatagacataaaatattttaattaaaacatcaaaccctaaaaagtattcccttctttaatcttcat |
15756873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 15756248 - 15756315
Alignment:
| Q |
11 |
aggttgacaattttcgttgtcgacaaaattatcttgtagttactatagatatttcaaagtatcaaaata |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
15756248 |
aggttgacaattttcgttgtcgacaaaattatcttgtagttactatagata-ttgaaagtatcaaaata |
15756315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 30920226 - 30920267
Alignment:
| Q |
74 |
aaaatagaaagaataaatttatctatcaagtgataatttttt |
115 |
Q |
| |
|
|||||| || ||||||||||||| |||||||||||||||||| |
|
|
| T |
30920226 |
aaaataaaatgaataaatttatcaatcaagtgataatttttt |
30920267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University