View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1294_low_12 (Length: 251)

Name: NF1294_low_12
Description: NF1294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1294_low_12
NF1294_low_12
[»] chr7 (4 HSPs)
chr7 (11-231)||(9121675-9121897)
chr7 (20-159)||(6035098-6035239)
chr7 (5-67)||(5219918-5219980)
chr7 (40-98)||(10081233-10081292)
[»] chr2 (2 HSPs)
chr2 (5-227)||(12545284-12545507)
chr2 (7-98)||(27885908-27885999)
[»] chr3 (1 HSPs)
chr3 (10-223)||(7808593-7808808)
[»] chr4 (1 HSPs)
chr4 (7-227)||(13956467-13956689)
[»] chr1 (4 HSPs)
chr1 (5-229)||(22058367-22058593)
chr1 (78-229)||(12759852-12760004)
chr1 (91-167)||(25696361-25696438)
chr1 (107-169)||(10023437-10023500)
[»] chr5 (1 HSPs)
chr5 (20-157)||(18601111-18601250)
[»] chr8 (3 HSPs)
chr8 (5-147)||(30869418-30869562)
chr8 (1-62)||(14728761-14728822)
chr8 (136-168)||(34390877-34390909)


Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 9121897 - 9121675
Alignment:
Q  11 aacttgtggttttgggagagttactccatgctttagagagtctgaccttctctgaaggtgt-gatttttgggtctggagcaatgattcactgagcattta 109  Q
    |||||||||||||| ||||||| ||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||    
T  9121897 aacttgtggttttgcgagagttgctccaggctttagagagtttgaccttctctgaaggtgtagatttttgggtctggagcaatgattcatcgagcattta 9121798  T
Q  110 ttcagggagatcaact-ataaattccttcatatgagagctagtgtggtggacgagaggtcaatagaatctgtacaacttctttcaaggttgtgggggtca 208  Q
    |  ||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| || ||||| | | ||||||||||||||||||||||||||     
T  9121797 taaagggatatcaacttataaattccttcatatgagagctagtgtggtggatgagaggtaaaaagaatttattcaacttctttcaaggttgtgggggtct 9121698  T
Q  209 tggtctcctctcaaggtgatttt 231  Q
    | ||||| |||||||||||||||    
T  9121697 tagtctcatctcaaggtgatttt 9121675  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 6035098 - 6035239
Alignment:
Q  20 ttttgggagagttactccatgctttagagagtctgaccttctctgaaggtgt-gatttttgggtctggagcaatgattcactgagcatttattcagggag 118  Q
    |||||||||||||| ||||  ||||| ||||||||| ||||||||||||||| || |||||||| ||||| ||||| ||  | ||  |||||||||  ||    
T  6035098 ttttgggagagttattccagactttaaagagtctgatcttctctgaaggtgtagaattttgggtttggagtaatgactcttttagtgtttattcagtaag 6035197  T
Q  119 atcaac-tataaattccttcatatgagagctagtgtggtgga 159  Q
    |||||| ||||  |||||| ||| ||||||||||| ||||||    
T  6035198 atcaacttataggttcctttataagagagctagtgaggtgga 6035239  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 5219918 - 5219980
Alignment:
Q  5 agtgggaacttgtggttttgggagagttactccatgctttagagagtctgaccttctctgaag 67  Q
    ||||||||||| || ||||||||||| | ||||| | |||||||||||||||||||| |||||    
T  5219918 agtgggaacttttgattttgggagagcttctccaggatttagagagtctgaccttctttgaag 5219980  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 10081233 - 10081292
Alignment:
Q  40 gctttagagagtctgaccttctctgaaggtgt-gatttttgggtctggagcaatgattca 98  Q
    ||||||||||||| | |||||||| ||||| | ||||||||||||||||| |||||||||    
T  10081233 gctttagagagtccggccttctcttaaggtcttgatttttgggtctggagtaatgattca 10081292  T

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Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 12545507 - 12545284
Alignment:
Q  5 agtgggaacttgtggttttgggagagttactccatgctttagagagtctgaccttctctgaaggtgt-gatttttgggtctggagcaatgattcactgag 103  Q
    |||||||||||||| |||| |||||| | ||||| || ||||||||||||| |||||  |||   || ||||||||||| |||||||||||||    |||    
T  12545507 agtgggaacttgtgattttaggagagctgctccaagccttagagagtctgatcttcttcgaaatcgtagatttttgggtttggagcaatgatttgtcgag 12545408  T
Q  104 catttattcagggagatcaact-ataaattccttcatatgagagctagtgtggtggacgagaggtcaatagaatctgtacaacttctttcaaggttgtgg 202  Q
    ||||||||||  |||||||||| ||||||||||||||||||||||||||||||||| | | ||| ||||||||| ||| ||||||||| ||||||||||     
T  12545407 catttattcaatgagatcaacttataaattccttcatatgagagctagtgtggtgggcaaaagg-caatagaatttgtgcaacttcttacaaggttgtga 12545309  T
Q  203 gggtcatggtctcctctcaaggtga 227  Q
    ||||  ||||||||| |||| ||||    
T  12545308 gggttttggtctcctttcaaagtga 12545284  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 27885999 - 27885908
Alignment:
Q  7 tgggaacttgtggttttgggagagttactccatgctttagagagtctgaccttctctgaaggtgt-gatttttgggtctggagcaatgattca 98  Q
    ||||| |||||| ||||||||||||||||| | |||||||| ||  | ||||||||| ||| ||| || |||||| |||||||||| ||||||    
T  27885999 tgggagcttgtgattttgggagagttactcta-gctttagaaaggataaccttctctaaagatgtagaattttggatctggagcaacgattca 27885908  T

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Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 7808808 - 7808593
Alignment:
Q  10 gaacttgtggttttgggagagttactccatgctttagagagtctgaccttctctgaaggtgt-gatttttgggtctggagcaatgattcactgagcattt 108  Q
    ||||||||| |||||| |||| | |||||  |||||||||| | || ||||||| || |||| || ||||| ||||||||||||||||||   | |||||    
T  7808808 gaacttgtgattttggaagaggtgctccagactttagagagcccgatcttctctaaatgtgtagacttttgagtctggagcaatgattcatcaaacattt 7808709  T
Q  109 attcagggagatcaact-ataaattccttcatatgagagctagtgtggtggacgagaggtcaatagaatctgtacaacttctttcaaggttgtgggggtc 207  Q
    |||||| ||||||  || |||||||||||||||||||||  | ||||||||||||||| | | || ||| ||| |||||||||||||||||||| | |||    
T  7808708 attcagtgagatcggcttataaattccttcatatgagagacaatgtggtggacgagagcttagtaaaatttgtgcaacttctttcaaggttgtgagagtc 7808609  T
Q  208 atggtctcctctcaag 223  Q
     |||||||||||||||    
T  7808608 ttggtctcctctcaag 7808593  T

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Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 13956467 - 13956689
Alignment:
Q  7 tgggaacttgtggttttgggagagttactccatgctttagagagtctgaccttctctgaaggtgt-gatttttgggtctggagcaatgattcactgagca 105  Q
    ||||||||| || |||||| |||| | | |||  ||||||||| || |||||||| ||||||||| |||||||||||||||||||||||||||   | ||    
T  13956467 tgggaacttatgattttggaagagctgcaccaaactttagagattccgaccttctttgaaggtgtagatttttgggtctggagcaatgattcatcaaaca 13956566  T
Q  106 tttattcagggagatcaact-ataaattccttcatatgagagctagtgtggtggacgagaggtcaatagaatctgtacaacttctttcaaggttgtgggg 204  Q
    |||||| || || ||||||| |||||||||||||||| ||||||||||||| ||| | || ||||  ||||| ||| || |||||| ||||  |||| |     
T  13956567 tttatttagtgatatcaacttataaattccttcatataagagctagtgtgggggatgtgaagtcagaagaatttgtgcagcttcttgcaagagtgtgaga 13956666  T
Q  205 gtcatggtctcctctcaaggtga 227  Q
    ||| |||||||||| ||||||||    
T  13956667 gtcgtggtctcctcgcaaggtga 13956689  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 22058367 - 22058593
Alignment:
Q  5 agtgggaacttgtggttttgggagagttactccatgctttagagagtctgaccttctctgaaggtgt-gatttttgggtctggagcaatgattcactgag 103  Q
    |||||||||||||| ||||| ||||||| ||| | |||||||||||    |||||||| |||||||| || |||||||| ||||| |||||||||  |||    
T  22058367 agtgggaacttgtgattttgagagagttgctctaggctttagagagatcaaccttctccgaaggtgtagacttttgggtttggagaaatgattcatagag 22058466  T
Q  104 catttattcagggagatcaac-tataaattccttc----atatgagagctagtgtggtggacgagaggtcaatagaatctgtacaacttctttcaaggtt 198  Q
    ||||||||||| || |||||| ||||| || | ||    ||||| ||||| ||||||||||||||| ||||| ||||  ||| ||||||||||||||| |    
T  22058467 catttattcagtgaaatcaacttataatttgcatcatatatatgggagctggtgtggtggacgagaagtcaaaagaaattgtgcaacttctttcaagggt 22058566  T
Q  199 gtgggggtcatggtctcctctcaaggtgatt 229  Q
    |||||     |||||||||||||||||||||    
T  22058567 gtggg----ttggtctcctctcaaggtgatt 22058593  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 229
Target Start/End: Original strand, 12759852 - 12760004
Alignment:
Q  78 tgggtctggagcaatgattcactgagcatttattcagggagatcaac-tataaattccttcatatgagagctagtgtggtggacgagaggtcaatagaat 176  Q
    ||||| |||||||||||||||  ||||||||||||||  | |||| | ||||| |||||| |||||||||||||||||||||| |||||||||  ||||     
T  12759852 tgggtttggagcaatgattcatcgagcatttattcagtaaaatcagcctataatttccttaatatgagagctagtgtggtggatgagaggtcagaagaaa 12759951  T
Q  177 ctgtacaacttctttcaaggttgtgggggtcatggtctcctctcaaggtgatt 229  Q
     ||| | ||||||||||||| |||||   || |||||||||||||||||||||    
T  12759952 ttgtgcgacttctttcaagggtgtggtaatcttggtctcctctcaaggtgatt 12760004  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 25696438 - 25696361
Alignment:
Q  91 atgattcactgagcatttattcagggagatcaact-ataaattccttcatatgagagctagtgtggtggacgagaggt 167  Q
    ||||||||  || ||||||||||| ||||||| || ||||||| ||||||||||||||||||||||| || |||||||    
T  25696438 atgattcatcgaacatttattcagtgagatcagcttataaatttcttcatatgagagctagtgtggttgatgagaggt 25696361  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 10023437 - 10023500
Alignment:
Q  107 ttattcagggagatcaact-ataaattccttcatatgagagctagtgtggtggacgagaggtca 169  Q
    ||||||||||| ||||||| |||||||   |||||||||||||||||||||||| || ||||||    
T  10023437 ttattcagggaaatcaacttataaattttgtcatatgagagctagtgtggtggatgaaaggtca 10023500  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 18601111 - 18601250
Alignment:
Q  20 ttttgggagagttactccatgctttagagagtctgaccttctctgaaggtg-tgatttttgggtctggagcaatgattcactgagcatttattcagggag 118  Q
    ||||||||||| | ||||| |||||| ||||||||||| ||||||||||||   | |||||| | |||  ||||||||||  || ||||||||||| |||    
T  18601111 ttttgggagagctgctccaggctttaaagagtctgaccctctctgaaggtgcatacttttggatttgggacaatgattcatcgaacatttattcagtgag 18601210  T
Q  119 atca-actataaattccttcatatgagagctagtgtggtg 157  Q
    ||||   |||||||| |||| |||||||||||||||||||    
T  18601211 atcagtttataaatttcttcgtatgagagctagtgtggtg 18601250  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 147
Target Start/End: Original strand, 30869418 - 30869562
Alignment:
Q  5 agtgggaacttgtggttttgggagagttactccatgctttagagagtctgaccttctctgaaggtg-tgatttttgggtctggagcaatgattcactgag 103  Q
    ||||||||||| || ||||||||||| | ||||| |||||||||||| | ||||| | ||||||||  || |||||||||||| ||||||| |||  ||     
T  30869418 agtgggaacttttgattttgggagagctgctccaggctttagagagttttaccttttatgaaggtgcagacttttgggtctggggcaatgactcatcgac 30869517  T
Q  104 catttattcagggagatc-aactataaattccttcatatgagagc 147  Q
    ||| ||||||| | |||| |  |||||||  ||||||||||||||    
T  30869518 catatattcagtgcgatcgatttataaatgtcttcatatgagagc 30869562  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 14728822 - 14728761
Alignment:
Q  1 ttttagtgggaacttgtggttttgggagagttactccatgctttagagagtctgaccttctc 62  Q
    |||||||||| ||||||| ||||||||| | | ||||||| |||||||||||||| ||||||    
T  14728822 ttttagtgggtacttgtgattttgggagggctgctccatgttttagagagtctgatcttctc 14728761  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 34390877 - 34390909
Alignment:
Q  136 tcatatgagagctagtgtggtggacgagaggtc 168  Q
    |||||||||||||||||||||||||||||||||    
T  34390877 tcatatgagagctagtgtggtggacgagaggtc 34390909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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