View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1294_low_15 (Length: 240)

Name: NF1294_low_15
Description: NF1294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1294_low_15
NF1294_low_15
[»] chr7 (3 HSPs)
chr7 (1-118)||(9121942-9122059)
chr7 (128-221)||(5219682-5219775)
chr7 (171-221)||(9122177-9122227)
[»] chr3 (3 HSPs)
chr3 (13-101)||(7808863-7808950)
chr3 (20-58)||(29953300-29953338)
chr3 (20-58)||(30002454-30002492)
[»] chr2 (1 HSPs)
chr2 (13-212)||(12545545-12545745)
[»] chr4 (1 HSPs)
chr4 (13-212)||(13956221-13956419)
[»] chr8 (2 HSPs)
chr8 (22-97)||(30869304-30869378)
chr8 (141-210)||(30869195-30869264)
[»] chr1 (2 HSPs)
chr1 (13-106)||(12759638-12759730)
chr1 (13-61)||(22058253-22058301)
[»] chr6 (1 HSPs)
chr6 (14-110)||(8025565-8025660)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 9121942 - 9122059
Alignment:
Q  1 cattcaaattggtctctcacagtcatatcaatcactttagcttctttttgtatagaaactttgaacaagcctagggacacaaatgctcaaaggaataaca 100  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||| ||    
T  9121942 cattcaaatccgtctctcacagtcatatcaatcactttagcttctttttgtatagaaactttgaacaagcctagggtcacgaattctcaatggaatagca 9122041  T
Q  101 cccaactagggacctttt 118  Q
    ||| ||||||||||||||    
T  9122042 cccgactagggacctttt 9122059  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 5219775 - 5219682
Alignment:
Q  128 gtagatcgacaatctctaaccttcgtgaggatattgttagagaaccaatcagtagactcaggctggcttgtttccaataaggagacctttttcc 221  Q
    ||||||| ||||||| |||||||| |||||||| | | ||||||||||| ||||||||||||||  || | | |||||||||||| || |||||    
T  5219775 gtagatcaacaatctataaccttcttgaggatactttcagagaaccaattagtagactcaggctaactcgatcccaataaggagatctctttcc 5219682  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 9122177 - 9122227
Alignment:
Q  171 accaatcagtagactcaggctggcttgtttccaataaggagacctttttcc 221  Q
    |||||| ||||||||||||||| ||||||||||||||||| | ||||||||    
T  9122177 accaattagtagactcaggctgacttgtttccaataaggacatctttttcc 9122227  T

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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 7808863 - 7808950
Alignment:
Q  13 tctctcacagtcatatcaatcactttagcttctttttgtatagaaactttgaacaagcctagggacacaaatgctcaaaggaataacac 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || |||| || ||| ||||||||||||||||    
T  7808863 tctctcacagtcatatcaatcactttagcttctttttgtatagaaac-ttgaaaaaggctcgggaaacgaattctcaaaggaataacac 7808950  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 29953300 - 29953338
Alignment:
Q  20 cagtcatatcaatcactttagcttctttttgtatagaaa 58  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  29953300 cagtcatatcaatcactttagcttctttttagatagaaa 29953338  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 30002454 - 30002492
Alignment:
Q  20 cagtcatatcaatcactttagcttctttttgtatagaaa 58  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  30002454 cagtcatatcaatcactttagcttctttttagatagaaa 30002492  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 12545545 - 12545745
Alignment:
Q  13 tctctcacagtcatatcaatcactttagcttctttttgtatagaaactttgaacaagcctagggacacaaatgctcaaaggaata--acacccaactagg 110  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||| ||| ||   | |||| |||||| ||||||||||||  ||||| ||| |||    
T  12545545 tctctcacagtcatatcaatcactttagcatctttttgtataaaaactt-gaaaaatattggggaaacaaattctcaaaggaataacacaccaaaccagg 12545643  T
Q  111 gaccttttnnnnnnntcgtagatcgacaatctctaaccttcgtgaggatattgttagagaaccaatcagtagactcaggctggcttgtttccaataagga 210  Q
    || ||||           ||||||||| ||||||||||||| |||| ||| | | ||| ||||||||||||| |||||| || ||||||| |||||||||    
T  12545644 gatctttccaaaaatctatagatcgaccatctctaaccttcctgagcatactatcagataaccaatcagtaggctcaggttgacttgttttcaataagga 12545743  T
Q  211 ga 212  Q
    ||    
T  12545744 ga 12545745  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 13956419 - 13956221
Alignment:
Q  13 tctctcacagtcatatcaatcactttagcttctttttgtatagaaactttgaacaagcctagggacacaaatgctcaaaggaataacacccaactaggga 112  Q
    |||||| || ||| ||||||||| ||||||| ||| || ||||||||||  |||| |||| |||| || ||| |||||||||||| | |||||| |||||    
T  13956419 tctctcgcaatcaaatcaatcacattagcttttttctggatagaaacttgaaaca-gcctggggaaacgaattctcaaaggaatagctcccaaccaggga 13956321  T
Q  113 ccttttnnnnnnntcgtagatcgacaatctctaaccttcgtgaggatattgttagagaaccaatcagtagactcaggctggcttgtttccaataaggaga 212  Q
     |||||       | |||||||||| ||||||||| ||  |||| ||| | | ||||||||||||| |||||| || ||| | |||| ||||||||||||    
T  13956320 tcttttagtaaatttgtagatcgaccatctctaacatttttgagtatactatcagagaaccaatcaatagactgagactgacatgttcccaataaggaga 13956221  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 30869378 - 30869304
Alignment:
Q  22 gtcatatcaatcactttagcttctttttgtatagaaactttgaacaagcctagggacacaaatgctcaaaggaata 97  Q
    |||||||||| ||||||||||||||| || ||||| ||||  ||||| |||||||| |||||| ||||||||||||    
T  30869378 gtcatatcaaacactttagcttctttctgaatagacacttgaaacaa-cctagggaaacaaattctcaaaggaata 30869304  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 30869264 - 30869195
Alignment:
Q  141 ctctaaccttcgtgaggatattgttagagaaccaatcagtagactcaggctggcttgtttccaataagga 210  Q
    ||||||| ||| |||||||| | |||||||||||||||||| || |||| || |||| | ||||||||||    
T  30869264 ctctaacattcatgaggatacttttagagaaccaatcagtaaacccaggttgacttgatcccaataagga 30869195  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 12759730 - 12759638
Alignment:
Q  13 tctctcacagtcatatcaatcactttagcttctttttgtatagaaactttgaacaagcctagggacacaaatgctcaaaggaataacacccaac 106  Q
    |||||||||| ||||||||| || ||||||||||| || ||||||||||  ||||| | |||| | || ||| |||||||||||| | ||||||    
T  12759730 tctctcacagacatatcaataacattagcttctttctgaatagaaacttgaaacaa-cataggaaaacgaattctcaaaggaatagctcccaac 12759638  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 22058301 - 22058253
Alignment:
Q  13 tctctcacagtcatatcaatcactttagcttctttttgtatagaaactt 61  Q
    |||||||  |||||||||||| ||||| |||||||||| ||||||||||    
T  22058301 tctctcatggtcatatcaatctctttaccttctttttgaatagaaactt 22058253  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 8025565 - 8025660
Alignment:
Q  14 ctctcacagtcatatcaatcactttagcttctttttgtatagaaactttgaacaagcctagggacacaaatgctcaaaggaataacacccaactagg 110  Q
    ||||| || |||||||||||| ||||| |||||| |  |||||||| |  ||||| |||||||| || ||| |||||||||||||||| | ||||||    
T  8025565 ctctcgcaatcatatcaatcattttaggttctttctccatagaaacctaaaacaa-cctagggaaacgaatcctcaaaggaataacactccactagg 8025660  T

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