View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1294_low_8 (Length: 318)
Name: NF1294_low_8
Description: NF1294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1294_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 84 - 222
Target Start/End: Original strand, 13379028 - 13379166
Alignment:
| Q |
84 |
cacagaggagaggagcggcagcatcaagtgataaggcatcgggaatacggacaataaagtgttcgtcgacaaccatggtgtcagagtagcctccatatgt |
183 |
Q |
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| T |
13379028 |
cacaaaggagaggagcggcagcatcaagtgataaggcatcgggaatacggacaataaagtgttcgtcgacaaccatggtgtcagagtagcctccatatgt |
13379127 |
T |
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| Q |
184 |
gatagtgccatcaacattcttggaactgtatgtctgaat |
222 |
Q |
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| T |
13379128 |
gatagtgccatcaacattcttggaactgtatgtctgaat |
13379166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 13373240 - 13373354
Alignment:
| Q |
92 |
agaggagcggcagcatcaagtgataaggcatcgggaatacggacaataaagtgttcgtcgacaaccatggtgtcagagtagcctccatatgtgatagtgc |
191 |
Q |
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| T |
13373240 |
agaggagcagcggcatcaagtggtaaggcatcaggaatacggatcacgaagtgttcgtgggcaaccatggtatcagagtagcctccatatgtgattgttc |
13373339 |
T |
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| Q |
192 |
catcaacattcttgg |
206 |
Q |
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| T |
13373340 |
catcaatattcttgg |
13373354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 186
Target Start/End: Complemental strand, 13393664 - 13393562
Alignment:
| Q |
84 |
cacagaggagaggagcggcagcatcaagtgataaggcatcgggaatacggacaataaagtgttcgtcgacaaccatggtgtcagagtagcctccatatgt |
183 |
Q |
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| T |
13393664 |
cacaaaggagaggagcagcagattcaagtggtaagccatcaggaatgtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgt |
13393565 |
T |
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| Q |
184 |
gat |
186 |
Q |
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| T |
13393564 |
gat |
13393562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 28430569 - 28430508
Alignment:
| Q |
155 |
accatggtgtcagagtagcctccatatgtgatagtgccatcaacattcttggaactgtatgt |
216 |
Q |
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| T |
28430569 |
accattgtgtcggagtagcctccatatgtgatggtgccatcaagattcttggaaccgtatgt |
28430508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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