View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1294_low_9 (Length: 308)
Name: NF1294_low_9
Description: NF1294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1294_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 54657651 - 54657373
Alignment:
| Q |
1 |
tgcaagtagtcggatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattggtcgtgtcaa |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657651 |
tgcaagtagttagatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattggtcgtgtcaa |
54657552 |
T |
|
| Q |
101 |
cattgcatttgatgtggccgggctgtggcttggtccacgtccgttgctgatcttgggggcttgccggatgcttagctcgttgcatgcagctccattcgtg |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657551 |
cattgcatttgatgtggccggcctgtggcttggtccacgtccgttgctgatcttgggggcttgccggatgcttagctcgttgcatgcagctccattcgtg |
54657452 |
T |
|
| Q |
201 |
tagcacatcataagcacaagagacaatgagggtcagtgaagtgtttgtagcctcccaaagcttggtattactactcttc |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657451 |
tagcacatcataagcacaagagacaatgagggtcagtgaagtgtttgtagcctcccaaagcttggtattactactcttc |
54657373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 3 - 279
Target Start/End: Complemental strand, 43733703 - 43733427
Alignment:
| Q |
3 |
caagtagtcggatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattggtcgtgtcaaca |
102 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | ||||| ||||| ||||||||| ||||||| |||||||||| |
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| T |
43733703 |
caagtagtcggatttacctaataatagagatcacgttgagtctctaaagcataaatcgtaagcagtaataaagttattattgaaattgaccgtgtcaaca |
43733604 |
T |
|
| Q |
103 |
ttgcatttgatgtggccgggctgtggcttggtccacgtccgttgctgatcttgggggcttgccggatgcttagctcgttgcatgcagctccattcgtgta |
202 |
Q |
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||||||||||| ||| ||||||| ||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||| |||||||||||||||||| | |
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| T |
43733603 |
ttgcatttgatatggtcgggctgcggcttggtccacgtcaattgatgatcttgggggcttgcatgatacttagctcgttacatgcagctccattcgtgga |
43733504 |
T |
|
| Q |
203 |
gcacatcataagcacaagagacaatgagggtcagtgaagtgtttgtagcctcccaaagcttggtattactactcttc |
279 |
Q |
| |
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|||||||||||||| ||||||| | | | | ||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
43733503 |
gcacatcataagcatgagagacattaaagatgggtgaagtgtttgtagcctcccaaagcttggtataacgactcttc |
43733427 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 25 - 280
Target Start/End: Original strand, 28570569 - 28570820
Alignment:
| Q |
25 |
aatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattggtcgtgtcaacattgcatttgatgtggccgggct |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| | |||||||||||||||||||||| |||| | |
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| T |
28570569 |
aatagagatcatgttgagtctctaaagcataaactgtaagccataatagagttattattgaaattggatgcgtcaacattgcatttgatgtggtcgggtt |
28570668 |
T |
|
| Q |
125 |
gtggcttggtccacgtccgttgctgatcttgggggcttgccggatgcttagctcgttgcatgcagctccattcgtgtagcacatcataagcacaagagac |
224 |
Q |
| |
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| |||||||||||| || ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
28570669 |
gcggcttggtccacatcgattgctgatctt-agggcttgcc---cgcttagctcgttgcatgcagctccattcgtgtagcacatcatgagcataagagac |
28570764 |
T |
|
| Q |
225 |
aatgagggtcagtgaagtgtttgtagcctcccaaagcttggtattactactcttct |
280 |
Q |
| |
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||||| ||| || |||||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
28570765 |
aatgaaggtgggtcaagtgtttctagcctcccaaagcttggtattacgactcttct |
28570820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 29928720 - 29928810
Alignment:
| Q |
1 |
tgcaagtagtcggatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattgg |
91 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||| |
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| T |
29928720 |
tgcaagtagtcacatttatcaaataacagagatcatgttgagtctctaaagcataaattgtaagccataataaagttattattgaaattgg |
29928810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 29928835 - 29928936
Alignment:
| Q |
143 |
gttgctgatcttgggggcttgccggatgcttagctcgttgcatgcagctccattcgtgtagcacatcataagcacaagagacaatgagggtcagtgaagt |
242 |
Q |
| |
|
|||| |||||||||||||||| | |||| |||||| |||||||||| ||||||| |||| |||||||| |||| ||||||||||| ||| ||||||| |
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| T |
29928835 |
gttgttgatcttgggggcttgtcagatgtttagcttgttgcatgcaaatccattcatgtaacacatcatgagcatgagagacaatgaaggtgggtgaagt |
29928934 |
T |
|
| Q |
243 |
gt |
244 |
Q |
| |
|
|| |
|
|
| T |
29928935 |
gt |
29928936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 42703168 - 42703227
Alignment:
| Q |
152 |
cttgggggcttgccggatgcttagctcgttgcatgcagctccattcgtgtagcacatcat |
211 |
Q |
| |
|
||||||||| |||||||| ||||||| ||||||| | |||||||||| ||||||||||| |
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|
| T |
42703168 |
cttgggggcacgccggatgtttagctctttgcatgaaactccattcgtatagcacatcat |
42703227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 34763013 - 34763053
Alignment:
| Q |
40 |
gagtctctaaagcataaaccataagccataatagagttatt |
80 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| |
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| T |
34763013 |
gagtctctaaagcataaaccatagcccatgatagagttatt |
34763053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 34763834 - 34763794
Alignment:
| Q |
40 |
gagtctctaaagcataaaccataagccataatagagttatt |
80 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| |
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| T |
34763834 |
gagtctctaaagcataaaccatagcccatgatagagttatt |
34763794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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