View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1295-Insertion-1 (Length: 450)

Name: NF1295-Insertion-1
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1295-Insertion-1
NF1295-Insertion-1
[»] chr1 (2 HSPs)
chr1 (5-450)||(3879961-3880409)
chr1 (107-147)||(3866120-3866160)


Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 5 - 450
Target Start/End: Original strand, 3879961 - 3880409
Alignment:
Q  5 acatgaacaaatatttcttttgaatttctggatttattttccaaaatttgattattcatgagctatgttagtatagtagtatattctgacaattcaaata 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3879961 acatgaacaaatatttcttttgaatttctggatttattttccaaaatttgattattcatgagctatgttagtatagtagtatattctgacaattcaaata 3880060  T
Q  105 agtgttttcctactcttgatcccttttacacaattctaattgttttttatataatcaactaatccagctgtaccataacttattgattgaagttttgcgt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  3880061 agtgttttcctactcttgatcccttttacacaattctaattgttttttatataatcaactaatccagctgtaccataacttattgattgaagttttgctt 3880160  T
Q  205 gtgatttttataatactgatgtac---ttttgtatgtcatattgatgaagtttatgaaagggtattcttggtattctcacaaaatcagtttaaagaatta 301  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3880161 gtgatttttataatactgatgtactttttttgtatgtcatattgatgaagtttatgaaagggtattcttggtattctcacaaaatcagtttaaagaacta 3880260  T
Q  302 ctgaaatttgtgactttagttgaaataattgcatgaatcattattagttgttactatcagtgtttagcggtagatgatccttgggataatgtctcaactt 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3880261 ctgaaatttgtgactttagttgaaataattgcatgaatcattattagttgttactatcagtgtttagcggtagatgatccttgggataatgtctcaactt 3880360  T
Q  402 ttctggctgttgtatctgtgagagattaggtttcttttcattcctggga 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3880361 ttctggctgttgtatctgtgagagattaggtttcttttcattcctggga 3880409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 3866120 - 3866160
Alignment:
Q  107 tgttttcctactcttgatcccttttacacaattctaattgt 147  Q
    |||||||| ||||||||||| || |||||||||||||||||    
T  3866120 tgttttcccactcttgatcctttctacacaattctaattgt 3866160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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