View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1295-Insertion-10 (Length: 572)

Name: NF1295-Insertion-10
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1295-Insertion-10
NF1295-Insertion-10
[»] chr8 (7 HSPs)
chr8 (8-443)||(36536024-36536459)
chr8 (513-572)||(36535934-36535993)
chr8 (513-572)||(5567496-5567555)
chr8 (513-572)||(25249076-25249135)
chr8 (513-572)||(30224300-30224359)
chr8 (513-572)||(3379216-3379275)
chr8 (513-566)||(6428810-6428863)
[»] scaffold0057 (1 HSPs)
scaffold0057 (513-572)||(58856-58915)
[»] chr4 (9 HSPs)
chr4 (513-572)||(18656178-18656237)
chr4 (513-572)||(7040431-7040490)
chr4 (513-572)||(23564777-23564836)
chr4 (513-572)||(23566451-23566510)
chr4 (513-570)||(3529251-3529308)
chr4 (513-566)||(52518829-52518882)
chr4 (513-566)||(52520671-52520724)
chr4 (514-570)||(23985845-23985901)
chr4 (513-566)||(54296498-54296551)
[»] chr3 (3 HSPs)
chr3 (513-572)||(1140071-1140130)
chr3 (513-572)||(6789690-6789749)
chr3 (513-572)||(17402884-17402944)
[»] chr6 (6 HSPs)
chr6 (514-572)||(1088755-1088813)
chr6 (513-572)||(19645402-19645461)
chr6 (513-565)||(15866650-15866702)
chr6 (513-565)||(15868462-15868514)
chr6 (513-572)||(5376947-5377007)
chr6 (513-572)||(5378802-5378862)
[»] chr7 (5 HSPs)
chr7 (513-572)||(44963233-44963292)
chr7 (513-566)||(4895654-4895707)
chr7 (513-566)||(28124696-28124749)
chr7 (513-566)||(28126523-28126576)
chr7 (513-565)||(37405559-37405611)
[»] chr2 (2 HSPs)
chr2 (513-572)||(29758190-29758249)
chr2 (544-572)||(8759166-8759194)
[»] chr1 (5 HSPs)
chr1 (513-566)||(16808687-16808740)
chr1 (513-565)||(9312099-9312151)
chr1 (513-565)||(17449381-17449433)
chr1 (513-565)||(3282871-3282923)
chr1 (513-565)||(3284572-3284624)
[»] scaffold0251 (1 HSPs)
scaffold0251 (513-565)||(6296-6348)


Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 8 - 443
Target Start/End: Complemental strand, 36536459 - 36536024
Alignment:
Q  8 ggatgaaggtgcaaactcttggtatgtttacgagtttagagcgtcctgttggtgtctggaaaaatgaagttcttatggctacagataaaatgatacatag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36536459 ggatgaaggtgcaaactcttggtatgtttacgagtttagagcgtcctgttggtgtctggaaaaatgaagttcttatggctacagataaaatgatacatag 36536360  T
Q  108 tgttggtggagttgttgcttggcttcctgaagatgatattggagctgagttttcctataacattataaattatcaagagaggttctttcctttacatgat 207  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36536359 tgttggtggagttgttgcttggcttcctgaagatgatgttggagctgagttttcctataacattataaattatcaagagaggttctttcctttacatgat 36536260  T
Q  208 gtggagaaaattgattattttgaaagcggaggatttttgtttatatgatactatgcttcttaatagcaatatcaacaaattaagcattaactgtaacaaa 307  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  36536259 gtggaggaaattgattattttgaaagcggaggatttttgtttatatgatactatgcttcttaatagcaatatcaacgaattaagcattaactgtaacata 36536160  T
Q  308 aggattatggtgggagctgagggcttaagattgaataagactttcttgtttagtttattatgtgtgaatcctttgacaatgattgtgtaagttctctata 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36536159 aggattatggtgggagctgagggcttaagattgaataagactttcttgtttagtttattatgtgtgaatcctttgacaatgattgtgtaagttctctata 36536060  T
Q  408 gttgcatgtgttaaaatagttcgactagagttagta 443  Q
    ||||||||||||||||||||||| ||||||||||||    
T  36536059 gttgcatgtgttaaaatagttcggctagagttagta 36536024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 513 - 572
Target Start/End: Complemental strand, 36535993 - 36535934
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatcttttatcaatc 572  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36535993 ctcaaactaatctctatatatagcaatactgttgtactcattcatcatcttttatcaatc 36535934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 513 - 572
Target Start/End: Original strand, 5567496 - 5567555
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatcttttatcaatc 572  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||    
T  5567496 ctcaaactaatctctatatataggaaaactattgtactcattcatcatcttttatcaatc 5567555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 513 - 572
Target Start/End: Original strand, 25249076 - 25249135
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatcttttatcaatc 572  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||| ||||||||||||||    
T  25249076 ctcaaactaatctctatatataggaacactattgtactcattcatgatcttttatcaatc 25249135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 513 - 572
Target Start/End: Original strand, 30224300 - 30224359
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatcttttatcaatc 572  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||| ||||||||||||||    
T  30224300 ctcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatc 30224359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 513 - 572
Target Start/End: Complemental strand, 3379275 - 3379216
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatcttttatcaatc 572  Q
    |||||||||||||||||||  || || ||| ||||||||||||||||| |||||||||||    
T  3379275 ctcaaactaatctctatattaaggaaaactattgtactcattcatcattttttatcaatc 3379216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 513 - 566
Target Start/End: Original strand, 6428810 - 6428863
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatctttta 566  Q
    ||||||||||||||||||| ||| || ||| ||||| |||||||||||||||||    
T  6428810 ctcaaactaatctctatatataggaacactattgtaatcattcatcatctttta 6428863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 513 - 572
Target Start/End: Original strand, 58856 - 58915
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatcttttatcaatc 572  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||    
T  58856 ctcaaactaatctctatatataggaacactattgtactcattcatcatcttttatcaatc 58915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 513 - 572
Target Start/End: Original strand, 18656178 - 18656237
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatcttttatcaatc 572  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||    
T  18656178 ctcaaactaatctctatatataggaaaactattgtactcattcatcatcttttatcaatc 18656237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 513 - 572
Target Start/End: Original strand, 7040431 - 7040490
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatcttttatcaatc 572  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||| ||||||||||||||    
T  7040431 ctcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatc 7040490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 513 - 572
Target Start/End: Complemental strand, 23564836 - 23564777
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatcttttatcaatc 572  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||| ||||||||||||||    
T  23564836 ctcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatc 23564777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 513 - 572
Target Start/End: Complemental strand, 23566510 - 23566451
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatcttttatcaatc 572  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||| ||||||||||||||    
T  23566510 ctcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatc 23566451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 513 - 570
Target Start/End: Complemental strand, 3529308 - 3529251
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatcttttatcaa 570  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||| ||||||||||||    
T  3529308 ctcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaa 3529251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 513 - 566
Target Start/End: Original strand, 52518829 - 52518882
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatctttta 566  Q
    ||||||||||||||||||| ||| || ||||||||||||| |||||||||||||    
T  52518829 ctcaaactaatctctatatataggaacactgttgtactcaatcatcatctttta 52518882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 513 - 566
Target Start/End: Original strand, 52520671 - 52520724
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatctttta 566  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||||||||||||    
T  52520671 ctcaaactaatctctatatataggaacactattgtactcattcatcatctttta 52520724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 514 - 570
Target Start/End: Original strand, 23985845 - 23985901
Alignment:
Q  514 tcaaactaatctctatatgtagcaatactgttgtactcattcatcatcttttatcaa 570  Q
    |||||||||||||||||| ||| || ||| ||||||||||||| |||||||||||||    
T  23985845 tcaaactaatctctatatataggaacactattgtactcattcaccatcttttatcaa 23985901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 513 - 566
Target Start/End: Original strand, 54296498 - 54296551
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatctttta 566  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||| ||||||||    
T  54296498 ctcaaactaatctctatatataggaacactattgtactcattcatgatctttta 54296551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 513 - 572
Target Start/End: Original strand, 1140071 - 1140130
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatcttttatcaatc 572  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||    
T  1140071 ctcaaactaatctctatatataggaacactattgtactcattcatcatcttttatcaatc 1140130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 513 - 572
Target Start/End: Original strand, 6789690 - 6789749
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatcttttatcaatc 572  Q
    ||||||||||||||||||| ||| |||||| |||||||||||||  ||||||| ||||||    
T  6789690 ctcaaactaatctctatatataggaatactattgtactcattcactatcttttttcaatc 6789749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 572
Target Start/End: Complemental strand, 17402944 - 17402884
Alignment:
Q  513 ctcaaactaatctct-atatgtagcaatactgttgtactcattcatcatcttttatcaatc 572  Q
    ||||||||||||||| |||| ||| || ||| |||||||||||||  ||||||||||||||    
T  17402944 ctcaaactaatctcttatatataggaacactattgtactcattcaatatcttttatcaatc 17402884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 514 - 572
Target Start/End: Complemental strand, 1088813 - 1088755
Alignment:
Q  514 tcaaactaatctctatatgtagcaatactgttgtactcattcatcatcttttatcaatc 572  Q
    |||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||    
T  1088813 tcaaactaatctctatatataggaacactattgtactcattcatcatcttttatcaatc 1088755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 513 - 572
Target Start/End: Complemental strand, 19645461 - 19645402
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatcttttatcaatc 572  Q
    ||||||||||||||||||| ||  || ||| |||||||||||||| ||||||||||||||    
T  19645461 ctcaaactaatctctatatataagaacactattgtactcattcattatcttttatcaatc 19645402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 513 - 565
Target Start/End: Original strand, 15866650 - 15866702
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatctttt 565  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||| |||||||    
T  15866650 ctcaaactaatctctatatttaggaacactattgtactcattcattatctttt 15866702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 513 - 565
Target Start/End: Original strand, 15868462 - 15868514
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatctttt 565  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||| |||||||    
T  15868462 ctcaaactaatctctatatataggaacactattgtactcattcattatctttt 15868514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 572
Target Start/End: Original strand, 5376947 - 5377007
Alignment:
Q  513 ctcaaactaatctct-atatgtagcaatactgttgtactcattcatcatcttttatcaatc 572  Q
    ||||||||||||||| |||| ||| || ||| |||||||||||||  ||||||||||||||    
T  5376947 ctcaaactaatctcttatatataggaacactattgtactcattcaatatcttttatcaatc 5377007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 572
Target Start/End: Original strand, 5378802 - 5378862
Alignment:
Q  513 ctcaaactaatctct-atatgtagcaatactgttgtactcattcatcatcttttatcaatc 572  Q
    ||||||||||||||| |||| ||| || ||| |||||||||||||  ||||||||||||||    
T  5378802 ctcaaactaatctcttatatataggaacactattgtactcattcaatatcttttatcaatc 5378862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 513 - 572
Target Start/End: Original strand, 44963233 - 44963292
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatcttttatcaatc 572  Q
    |||||| |||||||||||| ||| || ||| |||||||||||||||||||||||||||||    
T  44963233 ctcaaattaatctctatatataggaacactattgtactcattcatcatcttttatcaatc 44963292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 513 - 566
Target Start/End: Original strand, 4895654 - 4895707
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatctttta 566  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||||||||||||    
T  4895654 ctcaaactaatctctatatataggaacactattgtactcattcatcatctttta 4895707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 513 - 566
Target Start/End: Complemental strand, 28124749 - 28124696
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatctttta 566  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||||||||||||    
T  28124749 ctcaaactaatctctatatataggaacactattgtactcattcatcatctttta 28124696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 513 - 566
Target Start/End: Complemental strand, 28126576 - 28126523
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatctttta 566  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||||||||||||    
T  28126576 ctcaaactaatctctatatataggaacactattgtactcattcatcatctttta 28126523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 565
Target Start/End: Complemental strand, 37405611 - 37405559
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatctttt 565  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||  |||||||    
T  37405611 ctcaaactaatctctatatataggaacactattgtactcattcactatctttt 37405559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 513 - 572
Target Start/End: Original strand, 29758190 - 29758249
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatcttttatcaatc 572  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||| ||||||||||||||    
T  29758190 ctcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatc 29758249  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 544 - 572
Target Start/End: Complemental strand, 8759194 - 8759166
Alignment:
Q  544 ttgtactcattcatcatcttttatcaatc 572  Q
    |||||||||||||||||||||||||||||    
T  8759194 ttgtactcattcatcatcttttatcaatc 8759166  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 513 - 566
Target Start/End: Complemental strand, 16808740 - 16808687
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatctttta 566  Q
    ||||||||||||||||||| ||  || ||| |||||||||||||||||||||||    
T  16808740 ctcaaactaatctctatatatatgaacactattgtactcattcatcatctttta 16808687  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 513 - 565
Target Start/End: Original strand, 9312099 - 9312151
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatctttt 565  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||| |||||||    
T  9312099 ctcaaactaatctctatatataggaacactattgtactcattcattatctttt 9312151  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 513 - 565
Target Start/End: Original strand, 17449381 - 17449433
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatctttt 565  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||| |||||||    
T  17449381 ctcaaactaatctctatatataggaacactattgtactcattcattatctttt 17449433  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 565
Target Start/End: Original strand, 3282871 - 3282923
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatctttt 565  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||  |||||||    
T  3282871 ctcaaactaatctctatatataggaacactattgtactcattcactatctttt 3282923  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 565
Target Start/End: Original strand, 3284572 - 3284624
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatctttt 565  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||  |||||||    
T  3284572 ctcaaactaatctctatatataggaacactattgtactcattcactatctttt 3284624  T

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Target: scaffold0251 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 565
Target Start/End: Original strand, 6296 - 6348
Alignment:
Q  513 ctcaaactaatctctatatgtagcaatactgttgtactcattcatcatctttt 565  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||  |||||||    
T  6296 ctcaaactaatctctatatataggaacactattgtactcattcactatctttt 6348  T

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