View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295-Insertion-11 (Length: 688)
Name: NF1295-Insertion-11
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295-Insertion-11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 8 - 688
Target Start/End: Complemental strand, 50410940 - 50410264
Alignment:
| Q |
8 |
atcctctcatgtgtaattttcaaatagcatttctgtctcaataattgatattacaagtgacattgtggcagcagtgatgcatgtgtttaatgattaattt |
107 |
Q |
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| T |
50410940 |
atcctctcatgtgtaattttcaaatagcatttctgtctcaataattgatattacaagtgacattgtggcagcagtgatgcatgtgtttaatgattaattt |
50410841 |
T |
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| Q |
108 |
gtttgttatgattataatttattctgtagtttatgaagactcaagagtcgatgtttgtgaacaatatgatggctaataagtcaacactgttgactaaaga |
207 |
Q |
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| T |
50410840 |
gtttgttatgattataatttattctgtagtttatgaagactcaagggtcgatgtttgtgaacaatatgatggctaataagtcaacattgttgactaaaga |
50410741 |
T |
|
| Q |
208 |
ttgttcatctttcactcaaggaagaggggatagttttcagaatcataaatcaacctccagttactttgctggatcttttcttccttggcattggtcagtg |
307 |
Q |
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| T |
50410740 |
ttgttcatctttcactcaaggaagaggggatagttttcagaatcataaatcaacctccagttactttgctggatcttttcttccttggcattggtcagtg |
50410641 |
T |
|
| Q |
308 |
tttgcattctcatgctgttgttcattctaggattcaattatgttatcttctgtgctgactttttccccttccccttccatacaggaaaatatacgatgta |
407 |
Q |
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| T |
50410640 |
tttgcattctcatgctgttgttcattctaggattcaattatgttatcttctgtgctgactt------cttccccttccatacaggaaaatatacgatgta |
50410547 |
T |
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| Q |
408 |
aacattgataaatttgaggagaagccgtggaggattcccggtgctgacataacagattacttcaacttcggtttaaatgagaacacttggaagcaatact |
507 |
Q |
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| T |
50410546 |
aacattgataaatttgaggagaagccgtggaggattcccggtgctgacataacagattacttcaacttcggtttaaatgagaacacttggaagcaatact |
50410447 |
T |
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| Q |
508 |
gttcgtctttggtgagttcatcacttcattttgtagcaatgtataaaaccagttaagttgtttgaccttgcttactggatttggtattttcaggcatcca |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50410446 |
gttcgtctttggtgagttcatcacttcattttgtagcaatgtgtaaaaccagttaagttgtttgaccttgcttactggatttggtattttcaggcatcca |
50410347 |
T |
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| Q |
608 |
cacaggagcaatttgatcaacctgtatca-ggagcttactttctcattcctc-aaatgtgaagtggtatgctgatagtaattg |
688 |
Q |
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| T |
50410346 |
cacaggagcaatttgatcaacctgtatcagggagcttactttctcattcctcaaaatgtgaagtggtatgctgatagtaattg |
50410264 |
T |
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