View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1295-Insertion-2 (Length: 333)

Name: NF1295-Insertion-2
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1295-Insertion-2
NF1295-Insertion-2
[»] chr2 (5 HSPs)
chr2 (6-242)||(36322639-36322865)
chr2 (237-333)||(36322970-36323066)
chr2 (70-119)||(9436127-9436176)
chr2 (61-173)||(45266494-45266606)
chr2 (84-129)||(25635589-25635634)
[»] chr1 (5 HSPs)
chr1 (88-173)||(5276945-5277030)
chr1 (80-155)||(44167553-44167628)
chr1 (86-148)||(43049434-43049496)
chr1 (104-139)||(28698435-28698470)
chr1 (87-145)||(13697232-13697290)
[»] chr5 (7 HSPs)
chr5 (71-146)||(42910459-42910534)
chr5 (84-152)||(5173781-5173849)
chr5 (81-128)||(40516774-40516821)
chr5 (86-173)||(17890718-17890805)
chr5 (86-128)||(8888107-8888149)
chr5 (87-139)||(2424571-2424623)
chr5 (82-130)||(15580399-15580447)
[»] chr7 (4 HSPs)
chr7 (61-134)||(39887626-39887699)
chr7 (88-139)||(33630877-33630928)
chr7 (82-147)||(17164567-17164632)
chr7 (87-133)||(34268689-34268735)
[»] chr4 (5 HSPs)
chr4 (62-153)||(32028215-32028306)
chr4 (79-128)||(30746107-30746156)
chr4 (82-133)||(2260426-2260477)
chr4 (66-147)||(4795112-4795193)
chr4 (97-133)||(3477116-3477152)
[»] scaffold0045 (1 HSPs)
scaffold0045 (84-134)||(55983-56033)
[»] chr3 (5 HSPs)
chr3 (102-176)||(810749-810823)
chr3 (90-171)||(4030186-4030267)
chr3 (84-147)||(14222656-14222719)
chr3 (82-176)||(46644376-46644469)
chr3 (89-173)||(11669439-11669523)
[»] scaffold0020 (1 HSPs)
scaffold0020 (82-120)||(172529-172567)
[»] chr8 (3 HSPs)
chr8 (83-173)||(33325485-33325575)
chr8 (82-110)||(1915519-1915547)
chr8 (82-154)||(33325617-33325689)
[»] chr6 (2 HSPs)
chr6 (90-176)||(30808437-30808523)
chr6 (86-147)||(33944783-33944844)
[»] scaffold0392 (1 HSPs)
scaffold0392 (83-130)||(2051-2099)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 8e-89; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 6 - 242
Target Start/End: Original strand, 36322639 - 36322865
Alignment:
Q  6 cacatacaaggcacaagaatgtagatacaagtaaaagggtcttagcctatgttgtgtatgtcataatcacgtcgacccaccgtgatttttcaaaaactac 105  Q
    ||||||||||| ||||||||||||||||||| |||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36322639 cacatacaaggtacaagaatgtagatacaagcaaaatggtcttagcttatgttgtgtatgtcagaatcacgtcgacccaccgtgatttttcaaaaactac 36322738  T
Q  106 actttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatacctattgtgataccaaacacactcttagttaccaacactgcaaatacaaca 205  Q
    |||||||||||||||||||||||||          ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  36322739 actttgtagcttctacaaaatcacg----------gtgattcagacatacctcttgtgataccaaacacactcttagttaccaacactgcaaataaaaca 36322828  T
Q  206 tatataaatttccaaaagttacaacatcttcaaattt 242  Q
    |||||||||| |||||||||| |||||||||||||||    
T  36322829 tatataaattcccaaaagttaaaacatcttcaaattt 36322865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 237 - 333
Target Start/End: Original strand, 36322970 - 36323066
Alignment:
Q  237 aaatttatgtctttttcgtgcatgctgaaattatgttgcatatgaacctagaacatccaactccttatctctcaactcaaaccagtttaaatgttag 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36322970 aaatttatgtctttttcgtgcatgctgaaattatgttgcatatgaaccaagaacatccaactccttatctctcaactcaaaccagtttaaatgttag 36323066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 9436176 - 9436127
Alignment:
Q  70 aatcacgtcgacccaccgtgatttttcaaaaactacactttgtagcttct 119  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||| ||||    
T  9436176 aatcacggcgacccactatgatttttcaaaaactacactttgtagtttct 9436127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 45266606 - 45266494
Alignment:
Q  61 gtatgtcataatcacgtcgacccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatacctatt 160  Q
    |||||||| ||||| | ||| |||  ||||||||   ||||||||| |||| |||||||||||||| |||| || ||| ||| ||||  ||||||  |||    
T  45266606 gtatgtcagaatcatggcgatccattgtgattttcataaaactacattttgcagcttctacaaaattacggcggatcaacgtaattctaacatactcatt 45266507  T
Q  161 gtgataccaaaca 173  Q
    |||||||||||||    
T  45266506 gtgataccaaaca 45266494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 25635589 - 25635634
Alignment:
Q  84 accgtgatttttcaaaaactacactttgtagcttctacaaaatcac 129  Q
    |||||||||||  ||||||||||||||||||||||| |||| ||||    
T  25635589 accgtgattttctaaaaactacactttgtagcttctgcaaagtcac 25635634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 5277030 - 5276945
Alignment:
Q  88 tgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatacctattgtgataccaaaca 173  Q
    |||||||||||||| |||||||||||| ||||||||||||| | ||| |||||||||||| |||||| | | ||||||||||||||    
T  5277030 tgatttttcaaaaaatacactttgtagtttctacaaaatcatgatggatcaccgtgattctgacatatccactgtgataccaaaca 5276945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 44167553 - 44167628
Alignment:
Q  80 acccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatac 155  Q
    |||||||||||||||||||||||||||   ||||||||||||||||| | | ||| |||||||||||| |||||||    
T  44167553 acccaccgtgatttttcaaaaactacataatgtagcttctacaaaattatgatggatcaccgtgattctgacatac 44167628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 43049434 - 43049496
Alignment:
Q  86 cgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattca 148  Q
    |||||||||| |||| |||||||||||||||||| |||||||| |||||||| ||||||||||    
T  43049434 cgtgattttttaaaagctacactttgtagcttctgcaaaatcatggtgggtcgccgtgattca 43049496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 28698435 - 28698470
Alignment:
Q  104 acactttgtagcttctacaaaatcacggtgggtcac 139  Q
    ||||||||||||||||||||||||| ||||||||||    
T  28698435 acactttgtagcttctacaaaatcatggtgggtcac 28698470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 13697232 - 13697290
Alignment:
Q  87 gtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgat 145  Q
    |||||||||||||| ||||||| |||||||||  |||||||||  ||||||| ||||||    
T  13697232 gtgatttttcaaaagctacactgtgtagcttcagcaaaatcacattgggtcatcgtgat 13697290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 42910534 - 42910459
Alignment:
Q  71 atcacgtcgacccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgatt 146  Q
    |||||| ||| ||||||||||||||||||| || |||||||||||||||||||||||||  ||| |||||||||||    
T  42910534 atcacgacgatccaccgtgatttttcaaaagctgcactttgtagcttctacaaaatcacaatggatcaccgtgatt 42910459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 5173849 - 5173781
Alignment:
Q  84 accgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagaca 152  Q
    |||||||||||| |||| ||||| ||||||||||||  ||||||||||| | |||||||||||| ||||    
T  5173849 accgtgatttttaaaaatctacattttgtagcttctgtaaaatcacggtagatcaccgtgattctgaca 5173781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 40516774 - 40516821
Alignment:
Q  81 cccaccgtgatttttcaaaaactacactttgtagcttctacaaaatca 128  Q
    |||||| ||||||||||||| ||||||||||||||||||| |||||||    
T  40516774 cccaccatgatttttcaaaagctacactttgtagcttctataaaatca 40516821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 173
Target Start/End: Complemental strand, 17890805 - 17890718
Alignment:
Q  86 cgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatacctattgtgataccaaaca 173  Q
    |||||||||| ||||  |||||||| ||| || |  |||||||| |||| |||||||||||| |||||||| |  |||||||||||||    
T  17890805 cgtgattttttaaaagttacactttatagtttatgtaaaatcacagtggatcaccgtgattctgacatacccacggtgataccaaaca 17890718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 8888107 - 8888149
Alignment:
Q  86 cgtgatttttcaaaaactacactttgtagcttctacaaaatca 128  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||    
T  8888107 cgtgatttttcaaaaactacactttatagtttctaccaaatca 8888149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 2424623 - 2424571
Alignment:
Q  87 gtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcac 139  Q
    |||||||||||||  ||||||||| ||| ||||||||||| ||||||| ||||    
T  2424623 gtgatttttcaaatgctacactttatagtttctacaaaattacggtggatcac 2424571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 15580399 - 15580447
Alignment:
Q  82 ccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacg 130  Q
    ||||||| ||||||||||| ||||||||| || ||| ||||||||||||    
T  15580399 ccaccgtaatttttcaaaagctacactttataccttatacaaaatcacg 15580447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 39887626 - 39887699
Alignment:
Q  61 gtatgtcataatcacgtcgacccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgg 134  Q
    |||||||| ||||| | ||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||    
T  39887626 gtatgtcagaatcatggcgacccaccgtgattttccaaaagctacactttgtagcttctgcaaaatcacagtgg 39887699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 33630877 - 33630928
Alignment:
Q  88 tgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcac 139  Q
    ||||||||||||||||| | |||||||||| |||||||||||||||||||||    
T  33630877 tgatttttcaaaaactatattttgtagcttatacaaaatcacggtgggtcac 33630928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 17164567 - 17164632
Alignment:
Q  82 ccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattc 147  Q
    ||||| |||||||  |||| ||||||||| || ||| |||||||||||||||||||| ||||||||    
T  17164567 ccaccatgattttataaaagctacactttataacttttacaaaatcacggtgggtcatcgtgattc 17164632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 34268735 - 34268689
Alignment:
Q  87 gtgatttttcaaaaactacactttgtagcttctacaaaatcacggtg 133  Q
    |||||||| ||||||||| |||||||||||||| |||||||| ||||    
T  34268735 gtgattttccaaaaactaaactttgtagcttctgcaaaatcatggtg 34268689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 153
Target Start/End: Original strand, 32028215 - 32028306
Alignment:
Q  62 tatgtcataatcacgtcgacccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacat 153  Q
    ||||||| |||||||  || ||||  ||||||||||||| ||||||||| |||||| | |||||||||||||  |||| |||||||||||||    
T  32028215 tatgtcagaatcacgatgatccactatgatttttcaaaagctacactttatagcttatgcaaaatcacggtgaatcactgtgattcagacat 32028306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 30746156 - 30746107
Alignment:
Q  79 gacccaccgtgatttttcaaaaactacactttgtagcttctacaaaatca 128  Q
    |||||||| ||||||||||||||| ||||||||||| |||| ||||||||    
T  30746156 gacccaccatgatttttcaaaaacaacactttgtaggttctgcaaaatca 30746107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 2260477 - 2260426
Alignment:
Q  82 ccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtg 133  Q
    |||| ||||||||||| |||||||| |||||| |||||||||||| ||||||    
T  2260477 ccactgtgatttttcagaaactacaatttgtaccttctacaaaattacggtg 2260426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 4795193 - 4795112
Alignment:
Q  66 tcataatcacgtcgacccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattc 147  Q
    ||||||| ||| | |||| |||||||||| || ||||||||   |||||||| || ||||| ||||||| ||||||||||||    
T  4795193 tcataattacgacaacccgccgtgattttgcataaactacaaagtgtagcttttataaaattacggtggatcaccgtgattc 4795112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 3477152 - 3477116
Alignment:
Q  97 aaaaactacactttgtagcttctacaaaatcacggtg 133  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  3477152 aaaaactacactttgtagcttcaacaaaatcatggtg 3477116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 56033 - 55983
Alignment:
Q  84 accgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgg 134  Q
    ||||||||||| ||||||| ||||||||||||||| |||||||||||||||    
T  56033 accgtgattttgcaaaaaccacactttgtagcttcaacaaaatcacggtgg 55983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 810823 - 810749
Alignment:
Q  102 ctacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatacctattgtgataccaaacacac 176  Q
    ||||||||||||||||||| ||||||| ||||| ||||| |||||| |||||| |||  ||||||| ||| ||||    
T  810823 ctacactttgtagcttctataaaatcatggtggatcaccatgattctgacataactaccgtgatactaaatacac 810749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 4030267 - 4030186
Alignment:
Q  90 atttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatacctattgtgataccaaa 171  Q
    ||||||||||| |||||||||||||||||| |||||||| ||   | || | |||||| |||||||||| ||| ||||||||    
T  4030267 atttttcaaaagctacactttgtagcttctgcaaaatcatgggacgacatcatgattctgacatacctactgtaataccaaa 4030186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 14222656 - 14222719
Alignment:
Q  84 accgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattc 147  Q
    |||||||||||| |||||||||||||| |||||||   ||||||| ||||| ||||| ||||||    
T  14222656 accgtgatttttgaaaaactacactttatagcttcagtaaaatcatggtggatcaccatgattc 14222719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 46644376 - 46644469
Alignment:
Q  82 ccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatacctattgtgataccaaacacac 176  Q
    ||||||| ||||||  |||| | ||||||||| |||||  ||||||||||| |||||||||||||| || ||| ||| ||| ||||||| |||||    
T  46644376 ccaccgtaatttttttaaaattgcactttgtaacttctgtaaaatcacggt-ggtcaccgtgattctgagatagctactgtaataccaatcacac 46644469  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 11669523 - 11669439
Alignment:
Q  89 gatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatacctattgtgataccaaaca 173  Q
    |||||||||||| |||||||| ||||||||  |||||||| ||||| ||| ||||| || | || ||| || |||||| ||||||    
T  11669523 gatttttcaaaagctacacttcgtagcttcagcaaaatcatggtggatcatcgtgactctggcacacccatcgtgatatcaaaca 11669439  T

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Target: scaffold0020 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 172529 - 172567
Alignment:
Q  82 ccaccgtgatttttcaaaaactacactttgtagcttcta 120  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  172529 ccaccatgatttttcaaaagctacactttgtagcttcta 172567  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 33325485 - 33325575
Alignment:
Q  83 caccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatacctattgtgataccaaaca 173  Q
    ||||||||| |||||||||||| ||||| || ||||| |||||| ||  | | ||||||||||||| ||||| |||   ||||||||||||    
T  33325485 caccgtgatatttcaaaaactatactttttaacttctgcaaaattacaatagatcaccgtgattcaaacatatctaccatgataccaaaca 33325575  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 1915519 - 1915547
Alignment:
Q  82 ccaccgtgatttttcaaaaactacacttt 110  Q
    |||||||||||||||||||||||||||||    
T  1915519 ccaccgtgatttttcaaaaactacacttt 1915547  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 33325617 - 33325689
Alignment:
Q  82 ccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacata 154  Q
    ||||||| || |||||||||||| ||||| || ||||| |||||| ||| ||| |||| |||||||| |||||    
T  33325617 ccaccgtaatatttcaaaaactatactttttaacttctgcaaaattacgatggatcactgtgattcaaacata 33325689  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 30808523 - 30808437
Alignment:
Q  90 atttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatacctattgtgataccaaacacac 176  Q
    |||||||||||  |||| |||||||||| | |||||||||| ||| |||||||||||| || ||| | |   |||||||||||||||    
T  30808523 atttttcaaaagttacattttgtagctttttcaaaatcacgatggatcaccgtgattctgatatatccaccatgataccaaacacac 30808437  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 33944844 - 33944783
Alignment:
Q  86 cgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattc 147  Q
    ||||||| || |||| ||| |||||| ||||||| |||||||||| ||| ||||||||||||    
T  33944844 cgtgattctttaaaagctaaactttgcagcttctgcaaaatcacgatggatcaccgtgattc 33944783  T

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Target: scaffold0392 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 2099 - 2051
Alignment:
Q  83 caccgtgattttt-caaaaactacactttgtagcttctacaaaatcacg 130  Q
    ||||||||||||  ||||| ||||||||||||||||| |||||||||||    
T  2099 caccgtgattttcgcaaaagctacactttgtagcttcaacaaaatcacg 2051  T

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