View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1295-Insertion-6 (Length: 824)
Name: NF1295-Insertion-6
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295-Insertion-6 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 757; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 8 - 824
Target Start/End: Original strand, 55954376 - 55955197
Alignment:
| Q |
8 |
aaaatgcatagcaaaagggaaatatattggatgatctcaaatagaataaagtgctgacaatgaatttttgttacaagtgctgacgataattttttgaagg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55954376 |
aaaatgcatagcaaaagggaaatatattggatgatctcaaatagaataaagtgctgacaatgaatttttgttacaagtgctgacgataattttttgaagg |
55954475 |
T |
|
| Q |
108 |
gaataatcaaataggaaaatgctatgattagcaaagaagggaaatgatatgtatagcggnnnnnnntgcacgaatccatcacgataagt----attttag |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
55954476 |
gaataatcaaataggaaaatgctatgattagcaaagaagggaaatgatatgtatagcggaaaaaaatgcacgaatccatcacgataagtgtatattttag |
55954575 |
T |
|
| Q |
204 |
ttacctgcttacctgatttttgttaattccggacatttgccactgagtcattttaactataatacatgtttcgtgatggtttcacgatttttgttctcgt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
55954576 |
ttacctgcttacctgatttttgttaattccggacatctgccactgagtcattttaactataatacatgtttcgtgatggtttcacgatttttgtcctcgt |
55954675 |
T |
|
| Q |
304 |
gataaataacatcgctgaatcaatgtggagttggaatcaaatacaggccatttcccctagccgctgcagctccaaaggcttcagtcatatccaagtcctc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55954676 |
gataaataacatcgctgaatcaatgtggagttggaatcaaatacaggccatttctcctagccgctgcagctccaaaggcttcagtcatatccaagtcctc |
55954775 |
T |
|
| Q |
404 |
tggtttcattccattaggaagttcccaattgaagtgatacaacaatgcagccagaggaagctcaatattagctaagccaagcgaaattcccggacacatt |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55954776 |
tggtttcattccattaggaagttcccaattgaagtgatacaacaatgcagccagaggaagctcaatattagctaagccaagcgaaattcccggacacatt |
55954875 |
T |
|
| Q |
504 |
cttcttcctcccccaaaaggcatgtaatcaaagctattattattgttcaatttattaaaatcaaaaccagtactatcattaaacctttcaggtataaact |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55954876 |
cttcttcctcccccaaaaggcatgtaatcaaagctattattattgttcaatttattaaaatcaaaaccagtactatcattaaacctttcaggtataaact |
55954975 |
T |
|
| Q |
604 |
tctttgcatcataccaatgtttgggatctcttccaattgcccatgcatttactatcacgctagtctttattggtatttcatatccatctatgttgcacgc |
703 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
55954976 |
tctttgcatcataccaatgtttgggatctcttccaattgcccatgcatttactatcacgctagtctttattggtatttcatatccatctatgttgcaagc |
55955075 |
T |
|
| Q |
704 |
ttccctgcattctcttggaagcnaagtaaaaggtgggtgtaacctcatggtttctttgatcactgacttcaagtaactaagttcatgtagatcactctca |
803 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55955076 |
ttccctgcattctcttggaagcaaagtaaaaggtgggtgtaacctcatggtttctttgatcactgacttcaagtaactaagttcatgtagatcactctca |
55955175 |
T |
|
| Q |
804 |
tatattctc-ttttccctttaa |
824 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
55955176 |
tatattctctttttccctttaa |
55955197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 329 - 816
Target Start/End: Original strand, 55958254 - 55958744
Alignment:
| Q |
329 |
tggagttggaatcaaatacaggccatttcccctagccgctgcagctccaaaggcttcagtcatatccaagtcctctggtttcattccattaggaagttcc |
428 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55958254 |
tggagttggaatcaaatacaggttgtttctcctagccacaacagctccaaaggcttcagtcatatccaagtcctctggtttcattccattaggaagttcc |
55958353 |
T |
|
| Q |
429 |
caattgaagtgatacaacaatgcagccagaggaagctcaatattagctaagccaagcgaaattcccggacacattcttcttcctcccccaaaaggcatgt |
528 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||| |||||||| |||| |
|
|
| T |
55958354 |
caattgaagtgatacaataatgcagcaagaggaagctcaatattagctaagccaaacaaaattcctggacacattcttcttcctcctccaaaagggatgt |
55958453 |
T |
|
| Q |
529 |
aatcaaagctattattat---tgttcaatttattaaaatcaaaaccagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgttt |
625 |
Q |
| |
|
| |||||| ||||||||| | |||| |||||||||||||||| |||| |||| |||||| |||||||||||||||| |||||||||||||| ||| |
|
|
| T |
55958454 |
attcaaagttattattattactattcactttattaaaatcaaaatatttactgtcatgaaacctctcaggtataaacttctctgcatcataccaatattt |
55958553 |
T |
|
| Q |
626 |
gggatctcttccaattgcccatgcatttactatcacgctagtctttattggtatttcatatccatctatgttgcacgcttccctgcattctcttggaagc |
725 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| |
|
|
| T |
55958554 |
gggatctcttcacattgcccaagcatttactaacacattagtctttattggtatttcatatccacctatgttgcatgcttccctgcattctcttataagc |
55958653 |
T |
|
| Q |
726 |
naagtaaaaggtgggtgtaacctcatggtttctttgatcactgacttcaagtaactaagttcatgtagatcactctcatatattctctttt |
816 |
Q |
| |
|
||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
55958654 |
aaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgtagatcactctcatatgttctctttt |
55958744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 229 - 816
Target Start/End: Original strand, 41795369 - 41795956
Alignment:
| Q |
229 |
attccggacatttgccactgagtcattttaactataatacatgtttcgtgatggtttcacgatttttgttctcgtgataaataacatcgctgaatcaatg |
328 |
Q |
| |
|
||||||||| ||||||| |||||||||||| |||| ||||| ||| |||||||||||| | |||| ||| |||||||| | |||||||||||||| |
|
|
| T |
41795369 |
attccggacttttgccat--agtcattttaaccataacacatgcttcatgatggtttcacaaatttttccctcacgataaatagcgtcgctgaatcaatg |
41795466 |
T |
|
| Q |
329 |
tggagttggaatcaaatacaggccatttcccctagccgctgcagctccaaaggcttcagtcatatccaagtcctctggtttcattccattaggaagttcc |
428 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||| ||||||||| |||| ||||||| |||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
41795467 |
tggagtaggaatcaaatacaggccatttctcctagccgttgcagctcccaaggattcagtcttatctaagtcgtctggtttcattccattaggaagttcc |
41795566 |
T |
|
| Q |
429 |
caattgaagtgatacaacaatgcagccagaggaagctcaatattagctaagccaagcgaaattcccggacacattcttcttcctcccccaaaaggcatgt |
528 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | |||| |||| |
|
|
| T |
41795567 |
caattgaagtgatgcaacaatgcagctagaggaagctcaatgttagctaagccaagcgaaattcccggacacattcttcttccttccctagaagggatgt |
41795666 |
T |
|
| Q |
529 |
aatcaaagctattattattgttcaatttattaaaatcaaaaccagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgtttggg |
628 |
Q |
| |
|
| |||||| |||||||| | |||| ||||||||| |||||| | |||| || | |||||| | | ||||||| || | ||||||||| |||| |||||| |
|
|
| T |
41795667 |
attcaaagttattattactattcactttattaaattcaaaatctttactgtcctgaaacctcttatgtataaaattatctgcatcatatcaatatttggg |
41795766 |
T |
|
| Q |
629 |
atctcttccaattgcccatgcatttactatcacgctagtctttattggtatttcatatccatctatgttgcacgcttccctgcattctcttggaagcnaa |
728 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41795767 |
atctcttccgattgcccatgcatttactatcacactagtctttataggtatttcatatccacctatgttgcacgcttccctgcattctcttggaagcaaa |
41795866 |
T |
|
| Q |
729 |
gtaaaaggtgggtgtaac--ctcatggtttctttgatcactgacttcaagtaactaagttcatgtagatcactctcatatattctctttt |
816 |
Q |
| |
|
||||||||||| |||||| ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41795867 |
gtaaaaggtggatgtaacctctcattgtttctttgatcactgactttaagtaaccaagttcatgtagatcactctcatatattctctttt |
41795956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 215; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 371 - 814
Target Start/End: Original strand, 12425073 - 12425513
Alignment:
| Q |
371 |
agctccaaaggcttcagtcatatccaagtcctctggtttcattccattaggaagttcccaattgaagtgatacaacaatgcagccagaggaagctcaata |
470 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||| ||||||| ||||||||| || ||| | |||||| || | |||||||||||||||||||||||| |
|
|
| T |
12425073 |
agctccaaagacttcagtcatatctaagtcctcttctttcatttcattaggaattttccagtcgaagtggtaaagtaatgcagccagaggaagctcaata |
12425172 |
T |
|
| Q |
471 |
ttagctaagccaagcgaaattcccggacacattcttcttcctcccccaaaaggcatgtaatcaaagctattattattgttcaatttattaaaatcaaaac |
570 |
Q |
| |
|
|| || ||||||| | ||||||| |||||||||||||||||||| |||||||| | || | ||||||||||| ||| || ||||||||||||||||| |
|
|
| T |
12425173 |
tttgccaagccaaacaaaattcctggacacattcttcttcctcctccaaaagggaaatactgaaagctattatcatt---cactttattaaaatcaaaac |
12425269 |
T |
|
| Q |
571 |
cagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcatttactatcacgctagtctt |
670 |
Q |
| |
|
|||||||||||| |||||| || ||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||| | | |||| || |
|
|
| T |
12425270 |
cagtactatcatgaaacctctccggtataaacttctcagcatcagaccaatgttcgggatctcttccaattgcccatgcatttaatattaagttagtttt |
12425369 |
T |
|
| Q |
671 |
tattggtatttcatatccatctatgttgcacgcttccctgcattctcttggaagcnaagtaaaaggtgggtgtaacctcatggtttctttgatcactgac |
770 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||| |||||||||||||||| || |
|
|
| T |
12425370 |
taaaggtatttcatatccacctatgttgcacgcttccctgcattctctcatgagcaatgtagcaggtgggtgtaacctcagggtttctttgatcactaac |
12425469 |
T |
|
| Q |
771 |
ttcaagtaactaagttcatgtagatcactctcatatattctctt |
814 |
Q |
| |
|
|||||||| | ||||| ||||||||||||||||||||||||||| |
|
|
| T |
12425470 |
ttcaagtacccaagtttatgtagatcactctcatatattctctt |
12425513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 329 - 814
Target Start/End: Complemental strand, 12268654 - 12268172
Alignment:
| Q |
329 |
tggagttggaatcaaatacaggccatttcccctagccgctgcagctccaaaggcttcagtcatatccaagtcctctggtttcattccattaggaagttcc |
428 |
Q |
| |
|
|||||||||||||||| ||||| ||| ||||| | | | ||||||| | ||||||||||||| ||||| |||| ||||||| ||||||||| || | |
|
|
| T |
12268654 |
tggagttggaatcaaaaacaggttgtttttcctagacaccgtagctccatattcttcagtcatatcaaagtcttctgctttcatttcattaggaattttc |
12268555 |
T |
|
| Q |
429 |
caattgaagtgatacaacaatgcagccagaggaagctcaatattagctaagccaagcgaaattcccggacacattcttcttcctcccccaaaaggcatgt |
528 |
Q |
| |
|
|| | |||||| || | || ||||||||||||||||||||||| ||||| |||| | ||| ||| |||||||||||||||||||| |||||||| |||| |
|
|
| T |
12268554 |
cagtcgaagtggtaaagtaaggcagccagaggaagctcaatatttgctaaaccaaacaaaactcctggacacattcttcttcctcctccaaaagggatgt |
12268455 |
T |
|
| Q |
529 |
aatcaaagctattattattgttcaatttattaaaatcaaaaccagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgtttggg |
628 |
Q |
| |
|
| | ||||||||||| ||| || |||||||||||||||||||||| |||||| |||||| |||||||||||||||| ||||||| ||||||| ||||| |
|
|
| T |
12268454 |
actgaaagctattatcatt---cactttattaaaatcaaaaccagtattatcatgaaacctctcaggtataaacttctctgcatcagaccaatgattggg |
12268358 |
T |
|
| Q |
629 |
atctcttccaattgcccatgcatttactatcacgctagtctttattggtatttcatatccatctatgttgcacgcttccctgcattctcttggaagcnaa |
728 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | |||||||||| |||||||||||||| |||||||||| ||||||||||||||||||| ||| |
|
|
| T |
12268357 |
atctcttccaattgcccatgcatttaatattaaattagtctttataggtatttcatatcctcctatgttgcatgcttccctgcattctcttgtaagtatt |
12268258 |
T |
|
| Q |
729 |
gtaaaaggtgggtgtaacctcatggtttctttgatcactgacttcaagtaactaagttcatgtagatcactctcatatattctctt |
814 |
Q |
| |
|
| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||| ||||| |||||||| |
|
|
| T |
12268257 |
gcaccaggtgggtgtaacctcagggtttctttgatcactgacttcaagtaactaagttcatgcaaatcactttcataaattctctt |
12268172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 733 - 797
Target Start/End: Complemental strand, 7154319 - 7154255
Alignment:
| Q |
733 |
aaggtgggtgtaacctcatggtttctttgatcactgacttcaagtaactaagttcatgtagatca |
797 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||| |||||| | ||||||| ||||||| |
|
|
| T |
7154319 |
aaggtgggtgtaacctcattgtttctttgatcactaacttaaagtaagttagttcatttagatca |
7154255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 733 - 786
Target Start/End: Complemental strand, 7141549 - 7141496
Alignment:
| Q |
733 |
aaggtgggtgtaacctcatggtttctttgatcactgacttcaagtaactaagtt |
786 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||| |||||||| |||| |
|
|
| T |
7141549 |
aaggtgggtgtaacctcaatgtttctttgatcactaactttaagtaacttagtt |
7141496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 654
Target Start/End: Complemental strand, 7141710 - 7141631
Alignment:
| Q |
575 |
actatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcattta |
654 |
Q |
| |
|
|||||||| |||||| || || |||||| ||| ||||||| ||||| ||| ||||||||||| |||||||| ||||||| |
|
|
| T |
7141710 |
actatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcattta |
7141631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 627 - 661
Target Start/End: Complemental strand, 41465836 - 41465802
Alignment:
| Q |
627 |
ggatctcttccaattgcccatgcatttactatcac |
661 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
41465836 |
ggatctcttccaatcgcccatgcatttactatcac |
41465802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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