View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12950_low_1 (Length: 549)

Name: NF12950_low_1
Description: NF12950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12950_low_1
NF12950_low_1
[»] scaffold0001 (1 HSPs)
scaffold0001 (60-534)||(185972-186458)
[»] scaffold0158 (4 HSPs)
scaffold0158 (60-533)||(36351-36836)
scaffold0158 (198-533)||(31020-31349)
scaffold0158 (60-202)||(28629-28769)
scaffold0158 (462-539)||(36838-36915)
[»] scaffold0035 (3 HSPs)
scaffold0035 (60-539)||(97509-98004)
scaffold0035 (216-539)||(87950-88286)
scaffold0035 (60-158)||(87816-87916)
[»] chr1 (2 HSPs)
chr1 (95-539)||(18477700-18478159)
chr1 (95-539)||(18487796-18488254)
[»] chr4 (2 HSPs)
chr4 (187-539)||(14233376-14233741)
chr4 (187-539)||(14223281-14223646)
[»] chr2 (1 HSPs)
chr2 (187-539)||(28385837-28386202)
[»] scaffold0564 (1 HSPs)
scaffold0564 (187-539)||(535-900)
[»] scaffold1407 (1 HSPs)
scaffold1407 (232-539)||(1421-1727)
[»] scaffold0177 (1 HSPs)
scaffold0177 (232-539)||(32117-32424)


Alignment Details
Target: scaffold0001 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 60 - 534
Target Start/End: Complemental strand, 186458 - 185972
Alignment:
Q  60 tgaaatgaaacagtacgattgtatcaaactgtgagtgaaaaggaaactgaaacttacggttacaatcagttgtgaatttctaatgcttgcctaaaaactc 159  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| | | ||||||||||||||||| |||||| ||     
T  186458 tgaaataaaacagtacgattgtatcaaactgtgaatgaaaaggaaactgaaacttaggattacaatcggctatgaatttctaatgcttgtctaaaagctt 186359  T
Q  160 ttcttccccagcttttcctttctggacctatttataggccaagcttctttaacaacgtgttctggccgtgtctctgcaggtggagggagtaggagagaaa 259  Q
     ||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||| ||||||| |||||||||    
T  186358 ctct-cctcagctcttcctctctggacctatttataggccaagcttctttaacaacgtgttctgatcgtgcctctgcaggtgcagggagtgggagagaaa 186260  T
Q  260 actggaaaccgttcctgggagtgggggagactgattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggt---------- 349  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||              
T  186259 actggaaaccgttcctggaagtgggggagactgattctcccgaacccgtgacgggcgtcacagggtgtgacagtctgctcgtcacggggtggtgacggtc 186160  T
Q  350 ---ggtgttggtgacagccaggtcgagttgaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttctt 446  Q
       |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||    
T  186159 tggggtgctggtgacagccaggtcgagttgaaaggtgacggtcaacccgtcacagggtttgacggccgtcaccctgaagctgaattctttaggacttctt 186060  T
Q  447 cctttctttgttttctcgccgaatttcgtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccag 534  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||    
T  186059 cctttctttgttttctcgccgaatttcgtcatttttgcgcatggaggcctttatcgctgtgtacctgaaacatagccatacaacccag 185972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 60 - 533
Target Start/End: Original strand, 36351 - 36836
Alignment:
Q  60 tgaaatgaaacagtacgattgtatcaaactgtgagtgaaaaggaaactgaaacttacggttacaatcagttgtgaatttctaatgcttgcctaaaaactc 159  Q
    |||||| ||||||||||||||||||  ||||||| ||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||     
T  36351 tgaaataaaacagtacgattgtatcgtactgtgaatgaaaaggaaactgaaacttaggattacaatcagttatgaatttctaatgcttgcctaaaaactt 36450  T
Q  160 ttcttccccagcttttcctttctggacctatttataggccaagcttctttaacaacgtgttctggccgtgtctctgcaggtggagggagtaggagagaaa 259  Q
     ||| || ||||| ||||| |||||||||||||||||||||||||||||| ||||||| || ||  |||| ||||||||||||||||||| |||||||||    
T  36451 ctct-ccgcagctcttcctctctggacctatttataggccaagcttcttttacaacgtattatgatcgtgcctctgcaggtggagggagtgggagagaaa 36549  T
Q  260 actggaaaccgttcctgggagtgggggagactgattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggt---------- 349  Q
    |||||||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||||||||||| ||||||||  | ||||||||||              
T  36550 actggaaaccgttcctggaagtggggcagactgattctcccgaacccatgacgggcgtcacagggtgcgacggtcttatcgtcacggggtggtgacggtc 36649  T
Q  350 ---ggtgttggtgacagccaggtcgagttgaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttctt 446  Q
       |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  36650 tgcggtgctggtgacagccaggtcgagttgaaaggtgacggtcaacccgtcacagggtgtgacggccgtcaccctgaagctgaattctttaggacttctt 36749  T
Q  447 cctttctttgttttctcgccgaatttcgtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaaccca 533  Q
    |||||||| | ||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  36750 cctttcttcgctttgtcgccgaatttcgtcatttttgcgcatggaggcctttattgctgtgtacctgaaacatagccatacaaccca 36836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 198 - 533
Target Start/End: Original strand, 31020 - 31349
Alignment:
Q  198 ccaagcttctttaacaacgtgttctggccgtgtctctgcaggtggagggagtaggagagaaaactggaaaccgttcctgggagtgggggagactgattct 297  Q
    ||||||||||||||||| ||||||||  |||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  31020 ccaagcttctttaacaatgtgttctgatcgtgcctctgcaggtggagggagtgggagagaaaactggaaaccgttcctggaagtgggggagactgattct 31119  T
Q  298 cccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggt-------------ggtgttggtgacagccaggtcgagttgaaaggtga 384  Q
    ||| ||||||||||||||||||||||||||||||||||||| ||||||||||             |||| ||||||||||||||||||||||||||||||    
T  31120 cccgaacccgtgacgggcgtcacagggtgtgacggtctgctcgtcacggggtggtgacggtctggggtgctggtgacagccaggtcgagttgaaaggtga 31219  T
Q  385 cggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgccgaatttcgtcatttttgc 484  Q
    ||||||||                   |||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  31220 cggtcaac-------------------ccgtcaccctgaagctgaattctttaggacttcttcctttcttcgctttctcgccgaatttcgtcatttttgc 31300  T
Q  485 gcatagaggcctttattgccgtgtacctgaaacatagccatacaaccca 533  Q
    |||| |||||||||||||| ||||||||||||||||||| |||||||||    
T  31301 gcatggaggcctttattgctgtgtacctgaaacatagccgtacaaccca 31349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 60 - 202
Target Start/End: Original strand, 28629 - 28769
Alignment:
Q  60 tgaaatgaaacagtacgattgtatcaaactgtgagtgaaaaggaaactgaaacttacggttacaatcagttgtgaatttctaatgcttgcctaaaaactc 159  Q
    |||||| ||||||||||||||||| ||||||| | ||||||||||||||||||||| | |||||||||||| || |||||||| |||||||||||||||     
T  28629 tgaaataaaacagtacgattgtat-aaactgtaaatgaaaaggaaactgaaacttaggattacaatcagttatgcatttctaaagcttgcctaaaaactt 28727  T
Q  160 ttcttccccagcttttcctttctggacctatttataggccaag 202  Q
     || ||| ||||| ||||| |||||||||||||||||||||||    
T  28728 ctc-tccgcagctcttcctctctggacctatttataggccaag 28769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 36838 - 36915
Alignment:
Q  462 tcgccgaatttcgtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccagtataa 539  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  36838 tcgccgaatttcgtcatttttgcgcatggaggcctttattgctgtgtacctgaaacatagccatacaacccagcataa 36915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 60 - 539
Target Start/End: Original strand, 97509 - 98004
Alignment:
Q  60 tgaaatgaaacagtacgattgtatcaaactgtgagtgaaaaggaaac--tgaaacttacggttacaatcagttgtgaatttctaatgcttgcctaaaaac 157  Q
    |||||| ||| ||||||||||||||||||||||| |||||||||||   ||||||||| | |||||||||| | ||||||||||||||||||||||||||    
T  97509 tgaaataaaatagtacgattgtatcaaactgtgaatgaaaaggaaaacttgaaacttaggattacaatcagctatgaatttctaatgcttgcctaaaaac 97608  T
Q  158 tcttcttccccag---cttttcctttctggacctatttataggccaagcttctttaacaacgtgttctggccgtgtctctgcaggtggagggagtaggag 254  Q
    |  ||| ||||     |||| | ||||| ||||||||||||||||||||||  |||| |||||||||||| ||||  |||||||||||||| ||| ||||    
T  97609 t--tctcccccttttcctttccttttctagacctatttataggccaagctttcttaaaaacgtgttctggtcgtgcttctgcaggtggaggaagtgggag 97706  T
Q  255 agaaaactggaaaccgttcctgggagtgggggagactgattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggtggtgt 354  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||     
T  97707 agaaaactggaaaccgttcctgggagtggggaagactgattctcccgaacccgtgacgggcgtcacggggtgtgacggtctgctcgtcacggggtggtga 97806  T
Q  355 -------------tggtgacagccaggtcgagttgaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggac 441  Q
                 |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||    
T  97807 cggtctggggtgctggtgacagccaggtcgagttgaagggtgacggtcaacccgtcacagggtgtgacggtcgtcaccctgaagctgaattctttaggac 97906  T
Q  442 ttcttcctttctttgttttctcgccgaatttcgtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccagtataa 539  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  97907 ttctttctttctttgttttctcgccgaatttcgccatttttgcgcatggaggcctttattgctgtgtacctgaaacatagccatacaacccagcataa 98004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 216 - 539
Target Start/End: Original strand, 87950 - 88286
Alignment:
Q  216 gtgttctggccgtgtctctgcaggtggagggagtaggagagaaaactggaaaccgttcctgggagtgggggagactgattctcccaaacccgtgacgggc 315  Q
    ||||||||| ||||  |||||||||||||| ||| ||||||||||||| ||||||||||||||||||||  |||||||||||||| ||||||||||||||    
T  87950 gtgttctggtcgtgcttctgcaggtggaggaagtgggagagaaaactgaaaaccgttcctgggagtgggcaagactgattctcccgaacccgtgacgggc 88049  T
Q  316 gtcacagggtgtgacggtctgcttgtcacggggtggtgt-------------tggtgacagccaggtcgagttgaaaggtgacggtcaacccgtcacatg 402  Q
    ||||||||||||||| || |||||||||||||||||||              |||||||||||||||||||||||| |||||||||||||| |||||| |    
T  88050 gtcacagggtgtgacagtttgcttgtcacggggtggtgacggtctggggtgctggtgacagccaggtcgagttgaagggtgacggtcaacctgtcacagg 88149  T
Q  403 gtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgccgaatttcgtcatttttgcgcatagaggcctttattg 502  Q
    |||||||||  |||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  88150 gtgtgacggttgtcaccctgaagctgaattctttaggacttctttctttctttgttttctcgctgaatttcgtcatttttgcgcatggaggcctttattg 88249  T
Q  503 ccgtgtacctgaaacatagccatacaacccagtataa 539  Q
    | |||||||||||||||||||||||||||||| ||||    
T  88250 ctgtgtacctgaaacatagccatacaacccagcataa 88286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 87816 - 87916
Alignment:
Q  60 tgaaatgaaacagtacgattgtatcaaactgtgagtgaaaaggaaa--ctgaaacttacggttacaatcagttgtgaatttctaatgcttgcctaaaaac 157  Q
    |||||| ||| ||||||||||||||||||||||| |||||||||||   ||||||||| | |||||||||| | ||||||||||||| ||||||||||||    
T  87816 tgaaataaaatagtacgattgtatcaaactgtgaatgaaaaggaaaacttgaaacttaggattacaatcagctatgaatttctaatgtttgcctaaaaac 87915  T
Q  158 t 158  Q
    |    
T  87916 t 87916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 95 - 539
Target Start/End: Original strand, 18477700 - 18478159
Alignment:
Q  95 tgaaaaggaaact-gaaacttacggttacaatcagttgtgaatttctaatgcttgcctaaaaactcttcttccccagct--tttcctttctggacctatt 191  Q
    ||||||||||||| |||||||| | ||||||| || | |||||||||||||||||||||||||  |||||  ||    |  |||| | |||| |||||||    
T  18477700 tgaaaaggaaacttgaaacttaggattacaataagctatgaatttctaatgcttgcctaaaaaaacttctctcctttttcctttcttctctgcacctatt 18477799  T
Q  192 tataggccaagcttctttaacaacgtgttctggccgtgtctctgcaggtggagggagtaggagagaaaactggaaaccgttcctgggagtgggggagact 291  Q
    ||||||||||||||| | || |||||||||||| ||||  |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  18477800 tataggccaagcttcgtaaaaaacgtgttctggtcgtgcttctgcaggtggaggaagtgggagagaaaactggaaaccgttcctgggagtgggggagact 18477899  T
Q  292 gattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggt-------------ggtgttggtgacagccaggtcgagttgaa 378  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||             |||| |||| || ||||||||||| ||||    
T  18477900 gattctcccgaacccatgacgggcgtcacagggtgtgacggtctgctcgacacggggtggtgacggtctggggtgctggtaacggccaggtcgagctgaa 18477999  T
Q  379 aggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgccgaatttcgtcat 478  Q
    ||| ||||||||| |||||||| | |||||||| |||| ||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18478000 aggagacggtcaaaccgtcacaggatgtgacggtcgtccccccgaa-ctgaattctttaggacttcttcctttctttgttttcttgccgaatttcgtcat 18478098  T
Q  479 ttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccagtataa 539  Q
    ||||||||||  ||||||||||||| | |||||||||||| |||||||||| |||| ||||    
T  18478099 ttttgcgcatgaaggcctttattgctgagtacctgaaacacagccatacaaaccagcataa 18478159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 95 - 539
Target Start/End: Original strand, 18487796 - 18488254
Alignment:
Q  95 tgaaaaggaaact-gaaacttacggttacaatcagttgtgaatttctaatgcttgcctaaaaactcttcttccccagct--tttcctttctggacctatt 191  Q
    ||||||||||||| |||||||| | |||||||  | | |||||||||||||||||||||||||  |||||  ||    |  |||| | |||| |||||||    
T  18487796 tgaaaaggaaacttgaaacttaggattacaatatgctatgaatttctaatgcttgcctaaaaaaacttctctcctttttcctttcttctctgcacctatt 18487895  T
Q  192 tataggccaagcttctttaacaacgtgttctggccgtgtctctgcaggtggagggagtaggagagaaaactggaaaccgttcctgggagtgggggagact 291  Q
    ||||||||||||||| | || || ||||||||| | ||  |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  18487896 tataggccaagcttcctaaaaaatgtgttctggtcatgcttctgcaggtggaggaagtgggagagaaaactggaaaccgttcctgggagtgggggagact 18487995  T
Q  292 gattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggt-------------ggtgttggtgacagccaggtcgagttgaa 378  Q
    |||||| || ||||||||||| ||||||||||||||||| ||||||| | ||||||||             |||| |||| || ||||||||||| ||||    
T  18487996 gattcttccgaacccgtgacgtgcgtcacagggtgtgacagtctgctcgacacggggtggtgacggtctggggtgctggtaacggccaggtcgagctgaa 18488095  T
Q  379 aggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgccgaatttcgtcat 478  Q
    ||| ||||||||| |||||||| | |||||||| ||||| |||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18488096 aggagacggtcaatccgtcacaggatgtgacggtcgtca-cctgaa-ctgaattctttaggacttcttcctttctttgttttcttgccgaatttcgtcat 18488193  T
Q  479 ttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccagtataa 539  Q
    |||||||||| |||||||||||||| | |||||||||||| |||||||||| |||| ||||    
T  18488194 ttttgcgcatggaggcctttattgctgagtacctgaaacacagccatacaatccagcataa 18488254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 3e-74; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 187 - 539
Target Start/End: Complemental strand, 14233741 - 14233376
Alignment:
Q  187 ctatttataggccaagcttctttaacaacgtgttctggccgtgtctctgcaggtggagggagtaggagagaaaactggaaaccgttcctgggagtggggg 286  Q
    |||||||||||||||||||| ||   |||||| ||||  ||||  ||||||||||||| |||| ||||||||| |||||||||||| | |  | ||||||    
T  14233741 ctatttataggccaagcttcattggaaacgtgctctgatcgtgcttctgcaggtggagcgagtgggagagaaatctggaaaccgtttcagataatggggg 14233642  T
Q  287 agactgattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggtggtgttggt-------------gacagccaggtcgag 373  Q
    |||||| |||| || |||||||||||| ||||||||||||||||| |||||| ||||||||||||||  |||             |||||||||||||||    
T  14233641 agactgcttcttccgaacccgtgacggacgtcacagggtgtgacgatctgctcgtcacggggtggtgacggtctgggatgctgatgacagccaggtcgag 14233542  T
Q  374 ttgaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgccgaatttc 473  Q
    ||| | ||||||| ||| | ||||||| ||| |||||||||||||||||||||  ||||| ||| |||||||| | |||||||||||||| | ||||| |    
T  14233541 ttggagggtgacgatcagcacgtcacagggtatgacggccgtcaccctgaagcagaattccttaagacttctttccttctttgttttctcactgaattcc 14233442  T
Q  474 gtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccagtataa 539  Q
    |||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  14233441 gtcatttttgcgcatgaaggcctttattgctgtgtacctgaaacatagccatacaacccagcataa 14233376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 187 - 539
Target Start/End: Complemental strand, 14223646 - 14223281
Alignment:
Q  187 ctatttataggccaagcttctttaacaacgtgttctggccgtgtctctgcaggtggagggagtaggagagaaaactggaaaccgttcctgggagtggggg 286  Q
    |||||||||||||||||||| ||   |||||| ||||  ||||  ||||||||||||| |||| ||||||||| |||||||||||| | |  | ||||||    
T  14223646 ctatttataggccaagcttcattggaaacgtgctctgatcgtgcttctgcaggtggagcgagtgggagagaaatctggaaaccgtttcagataatggggg 14223547  T
Q  287 agactgattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggtggtgttggt-------------gacagccaggtcgag 373  Q
    |||||| |||| || |||||||||||| ||||||||||||||||| |||||| ||||||||||||||  |||             |||||||||||||||    
T  14223546 agactgcttcttccgaacccgtgacggacgtcacagggtgtgacgatctgctcgtcacggggtggtgacggtctgggatgctgatgacagccaggtcgag 14223447  T
Q  374 ttgaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgccgaatttc 473  Q
    ||| | ||||||| ||| | ||||||| ||| |||||||||||||||||||||  ||||| ||| |||||||  | |||||||||||||| | ||||| |    
T  14223446 ttggagggtgacgatcagcacgtcacagggtatgacggccgtcaccctgaagcagaattccttaagacttctatccttctttgttttctcactgaattcc 14223347  T
Q  474 gtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccagtataa 539  Q
    |||||||||||||||  |||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  14223346 gtcatttttgcgcatgaaggcctttattgctatgtacctgaaacatagccatacaacccagcataa 14223281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 187 - 539
Target Start/End: Complemental strand, 28386202 - 28385837
Alignment:
Q  187 ctatttataggccaagcttctttaacaacgtgttctggccgtgtctctgcaggtggagggagtaggagagaaaactggaaaccgttcctgggagtggggg 286  Q
    |||||||||||||||||||| ||   |||||| ||||  ||||  ||||||||||||| |||| ||||||||| |||||||||||| | |  | ||||||    
T  28386202 ctatttataggccaagcttcattggaaacgtgctctgatcgtgcttctgcaggtggagcgagtgggagagaaatctggaaaccgtttcagataatggggg 28386103  T
Q  287 agactgattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggtggtgt-------------tggtgacagccaggtcgag 373  Q
    |||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||              |||||||||||||||||||    
T  28386102 agactgcttcttccgaacccgtgacgggcgtcacagggtgtgacgatctgctcgtcacggggtggtgacggtctgggatgctggtgacagccaggtcgag 28386003  T
Q  374 ttgaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgccgaatttc 473  Q
    ||| | ||||||| ||| | ||||||| ||| ||||| |||||||||||||||  |||||  || |||||||| | |||||||||||||| | ||||| |    
T  28386002 ttggagggtgacgatcagcacgtcacagggtatgacgaccgtcaccctgaagcagaattccctaagacttctttccttctttgttttctcactgaattcc 28385903  T
Q  474 gtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccagtataa 539  Q
    |||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  28385902 gtcatttttgcgcatgaaggcctttattgctgtgtacctgaaacatagccatacaacccagcataa 28385837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 187 - 539
Target Start/End: Original strand, 535 - 900
Alignment:
Q  187 ctatttataggccaagcttctttaacaacgtgttctggccgtgtctctgcaggtggagggagtaggagagaaaactggaaaccgttcctgggagtggggg 286  Q
    |||||||||||||||||||| ||   |||||| ||||  ||||  ||||||||||||| |||| |||||||||  ||||||||||| | |  | ||||||    
T  535 ctatttataggccaagcttcattggaaacgtgctctgatcgtgcttctgcaggtggagcgagtgggagagaaatatggaaaccgtttcagataatggggg 634  T
Q  287 agactgattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggtggtgttggt-------------gacagccaggtcgag 373  Q
    |||||| |||| || |||||||||||| ||||||||||||||||| |||||| ||||||||||||||  |||             |||||||||||||||    
T  635 agactgcttcttccgaacccgtgacggacgtcacagggtgtgacgatctgctcgtcacggggtggtgacggtctgggatgctgatgacagccaggtcgag 734  T
Q  374 ttgaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgccgaatttc 473  Q
    ||| | ||||||| ||| | ||||||| ||| |||||||||||||||||||||  ||||| ||| |||||||| | |||||||||||||| | ||||| |    
T  735 ttggagggtgacgatcagcacgtcacagggtatgacggccgtcaccctgaagcagaattccttaagacttctttccttctttgttttctcactgaattcc 834  T
Q  474 gtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccagtataa 539  Q
    |||||||||| ||||  ||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  835 gtcatttttgagcatgaaggcctttattgctgtgtacctgaaacatagccatacaacccagcataa 900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1407 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: scaffold1407
Description:

Target: scaffold1407; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 232 - 539
Target Start/End: Original strand, 1421 - 1727
Alignment:
Q  232 tctgcaggtggagggagtaggagagaaaactggaaaccgttcctgggagtgggggagactgattctcccaaacccgtgacgggcgtcacagggtgtgacg 331  Q
    ||||||||||||| |||| |||||||||||||| ||||||| | |  | |||||||||||| |||| || |||||||||||| |||||||||||||||||    
T  1421 tctgcaggtggagcgagtgggagagaaaactgggaaccgtttcagataatgggggagactgcttcttccgaacccgtgacggacgtcacagggtgtgacg 1520  T
Q  332 gtctgcttgtcacggggtggtgttggtgacagccaggtcgagttgaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaat 431  Q
     |||||| ||||||||||||||  |||    || ||||||||||| | ||||||| ||||| ||||||| ||| |||||||||||||||||||||  |||    
T  1521 atctgctcgtcacggggtggtgacggtctgggc-aggtcgagttggagggtgacgatcaacacgtcacagggtatgacggccgtcaccctgaagcagaat 1619  T
Q  432 tctttaggacttcttcctttctttgttttctcgccgaatttcgtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacc 531  Q
    || | | |||||||| | |||||||||||||  | ||||| |||||||||| |||||  ||||||||||||| ||||||||||||||||| |||||||||    
T  1620 tcctcaagacttctttccttctttgttttcttactgaattccgtcatttttacgcatgaaggcctttattgctgtgtacctgaaacatagtcatacaacc 1719  T
Q  532 cagtataa 539  Q
    ||| ||||    
T  1720 cagcataa 1727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 232 - 539
Target Start/End: Complemental strand, 32424 - 32117
Alignment:
Q  232 tctgcaggtggagggagtaggagagaaaactggaaaccgttcctgggagtgggggagactgattctcccaaacccgtgacgggcgtcacagggtgtgacg 331  Q
    ||||||||||||| |||| ||||||||||| |||||| ||| | |  | |||||||||||| |||| || |||||||||||| |||||||||||||||||    
T  32424 tctgcaggtggagcgagtgggagagaaaaccggaaacagtttcagataatgggggagactgcttcttccgaacccgtgacggacgtcacagggtgtgacg 32325  T
Q  332 gtctgcttgtcacggggtggtgttgg--tgacagccaggtcgag--ttgaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagct 427  Q
     |||||| |||||||| |||||  ||  ||   | |||||||||  ||| | ||||||| ||||| ||||||| |||||||||||||||||||||||||     
T  32324 atctgctcgtcacggg-tggtgacggcttg---ggcaggtcgagagttggagggtgacgatcaacacgtcacagggtgtgacggccgtcaccctgaagca 32229  T
Q  428 aaattctttaggacttcttcctttctttgttttctcgccgaatttcgtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatac 527  Q
     ||||| | | |||||||| | |||||||||||||  | ||||| ||||||||||||||||  ||||||||||||| ||||||||||||||||| |||||    
T  32228 gaattcctcaagacttctttccttctttgttttcttactgaattccgtcatttttgcgcatgaaggcctttattgctgtgtacctgaaacatagacatac 32129  T
Q  528 aacccagtataa 539  Q
    ||||||| ||||    
T  32128 aacccagcataa 32117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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