View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12950_low_13 (Length: 240)
Name: NF12950_low_13
Description: NF12950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12950_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 44083042 - 44082803
Alignment:
| Q |
1 |
tattggtgttgaaagtagaaaccatgatagagtgctttacatgtcgttgctcttatctgcaattcgctgttaggtccatgagaatttttcactatgcca- |
99 |
Q |
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| T |
44083042 |
tattggtgttgaaagtagaaaccatgatagagtgctttacatgtcgttgctcttatctgcaattcgctgttaggtccatgagaatttttcactatgccat |
44082943 |
T |
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| Q |
100 |
---------------atcttatctataatttttctcctttctttttgaaactaatatttatatatgatgctaatttcaatctttactttcattgacatta |
184 |
Q |
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| T |
44082942 |
cattttgacatgccaatcttatctataatttttctcctttctttttgaaactaatatttatatatgttgctaatttcaatctttactttcattgacatta |
44082843 |
T |
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| Q |
185 |
aattatatttgctattgtcaatgccttcagttattagttt |
224 |
Q |
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| T |
44082842 |
aattatatttgctattgtcaatgccttcagttattagttt |
44082803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 44092035 - 44092003
Alignment:
| Q |
94 |
atgccaatcttatctataatttttctcctttct |
126 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
44092035 |
atgccaatcatatctataatttttctcctttct |
44092003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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