View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12950_low_2 (Length: 495)
Name: NF12950_low_2
Description: NF12950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12950_low_2 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 495; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Complemental strand, 44885723 - 44885229
Alignment:
| Q |
1 |
cccatgatttcacaaaatgccaataatttgttgcttgctttccaaaaaatggttccatgagcttgtacttttcactatttgcatgaagaaggcgtggaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44885723 |
cccatgatttcacaaaatgccaataatttgttgcttgctttccaaaaaatggttccatgagcttgtacttttcactatttgcatgaagaaggcgtggaaa |
44885624 |
T |
|
| Q |
101 |
gtcgcaagcaagatgataaatagcatgtataccaactccaattgctactgccacagctattacctgcaaattacatattaacatgtgcattaaatcactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44885623 |
gtcgcaagcaagatgataaatagcatgtataccaactccaattgctactgccacagctattacctgcaaattacatattaacatgtgcattaaatcactt |
44885524 |
T |
|
| Q |
201 |
gttagcaagaatgtggattttgtccttttatcattctctgatgtacagccagttgtaatatttaccttgtggaagttgaggttgtcattaaaaggaacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44885523 |
gttagcaagaatgtggattttgtccttttatcattctctgatgtacagccagttgtaatatttaccttgtggaagttgaggttgtcattaaaaggaacaa |
44885424 |
T |
|
| Q |
301 |
caatgcctagcttggtcttgctcctgagccatgtaacagtgtttcggcaaacaggtaacaagataagagccatgttcaatttgagtgtctcagctgcacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44885423 |
caatgcctagcttggtcttgctcctgagccatgtaacagtgtttcggcaaacaggtaacaagataagagccatgttcaatttgagtgtctcagctgcacc |
44885324 |
T |
|
| Q |
401 |
tttagccatgcaaacacaatggcccatcacctcataagcagcttttcttcgatactgcacaaatttgtaggcaaatagacctaacataactccaa |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44885323 |
tttagccatgcaaacacaatggcccatcacctcataagcagcttttcttcgatactgcacaaatttgtaggcaaatagacctaacataactccaa |
44885229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 262 - 495
Target Start/End: Complemental strand, 44914704 - 44914471
Alignment:
| Q |
262 |
ttaccttgtggaagttgaggttgtcattaaaaggaacaacaatgcctagcttggtcttgctcctgagccatgtaacagtgtttcggcaaacaggtaacaa |
361 |
Q |
| |
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|||||||||||||||||||||| |||| |||||||||| |||||||||| ||||||||| |||| |||||||| | |||||||| |||||||||||||| |
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| T |
44914704 |
ttaccttgtggaagttgaggttatcatcaaaaggaacagcaatgcctagtttggtcttgttcctaagccatgtgatggtgtttcgacaaacaggtaacaa |
44914605 |
T |
|
| Q |
362 |
gataagagccatgttcaatttgagtgtctcagctgcacctttagccatgcaaacacaatggcccatcacctcataagcagcttttcttcgatactgcaca |
461 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||| ||||||||| ||||||| |
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| T |
44914604 |
gataatagccatgttcaatttgagtgtctcagctgcacctttagccatgcacacacaatgacccattacttcataagcatcttttcttctgtactgcatg |
44914505 |
T |
|
| Q |
462 |
aatttgtaggcaaatagacctaacataactccaa |
495 |
Q |
| |
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|||||||||||||||||||| ||||||| |||| |
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| T |
44914504 |
aatttgtaggcaaatagaccacacataacaccaa |
44914471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 44915362 - 44915194
Alignment:
| Q |
1 |
cccatgatttcacaaaatgccaataatttgttgcttgctttccaaaaaatggttccatgagcttgtacttttcactatttgcatgaagaaggcgtggaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44915362 |
cccatgatttcacaaaatgccaataacttgttggttgctttccaaaaaatggttccatgagcttgtacttttcactatttgcatgaagaaggcgaggaaa |
44915263 |
T |
|
| Q |
101 |
gtcgcaagcaagatgataaatagcatgtataccaactccaattgctactgccacagctattacctgcaa |
169 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| |
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| T |
44915262 |
gtcgcaagtaagatgataaatagcatgtataccaactccagttgctactgccacagcaatcacctgcaa |
44915194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 262 - 495
Target Start/End: Complemental strand, 44898790 - 44898557
Alignment:
| Q |
262 |
ttaccttgtggaagttgaggttgtcattaaaaggaacaacaatgcctagcttggtcttgctcctgagccatgtaacagtgtttcggcaaacaggtaacaa |
361 |
Q |
| |
|
|||||| ||| |||| ||||||||||| |||||||||| |||||||||||||||||||| ||| ||||| || || |||||||||||||||||||| || |
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| T |
44898790 |
ttacctggtgaaagtggaggttgtcatcaaaaggaacagcaatgcctagcttggtcttgtccctaagccaggttacggtgtttcggcaaacaggtaataa |
44898691 |
T |
|
| Q |
362 |
gataagagccatgttcaatttgagtgtctcagctgcacctttagccatgcaaacacaatggcccatcacctcataagcagcttttcttcgatactgcaca |
461 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||| |||||||| |
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| T |
44898690 |
gataatggccatattcaatttgagtgtctcagctgcacctttagccatacagacacaatggcccatcacttcatatgcagcttttcttctatactgcatg |
44898591 |
T |
|
| Q |
462 |
aatttgtaggcaaatagacctaacataactccaa |
495 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||| |
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| T |
44898590 |
aatttgtaggcaaatagaccacacataacaccaa |
44898557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 44899107 - 44898933
Alignment:
| Q |
1 |
cccatgatttcacaaaatgccaataatttgttgcttgctttccaaaaaatggttccatgagcttgtacttttcactatttgcatgaagaaggcgtggaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| ||| | ||||| |
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| T |
44899107 |
cccatgatttcacaaaatgccaataacttgttgcttgctttccaaaaaatggttccatgagctcgtacttttcactattcgcgtgaataagactaggaaa |
44899008 |
T |
|
| Q |
101 |
gtcgcaagcaagatgataaatagcatgtataccaactccaattgctactgccacagctattacctgcaaattaca |
175 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| |||| |
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|
| T |
44899007 |
gtcacaagcaagatgataaatagcatgtataccaactccaattgctattgcaacagctattatctgcaaaataca |
44898933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 39983004 - 39982835
Alignment:
| Q |
1 |
cccatgatttcacaaaatgccaataatttgttgcttgctttccaaaaaatggttccatgagcttgtacttttcactatttgcatgaagaaggcgtggaaa |
100 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||||| || || ||| ||||| || || || ||||||||||||||| | |||||||||||| ||| ||||| |
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| T |
39983004 |
cccaagatttgacaaaatgccagtaatttgttggtttctctccgaaaaaaggctcaatcagcttgtacttttcattgcttgcatgaagaatgcgaggaaa |
39982905 |
T |
|
| Q |
101 |
gtcgcaagcaagatgataaatagcatgtataccaactccaattgctactgccacagctattacctgcaaa |
170 |
Q |
| |
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|| |||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| | ||||||| |
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| T |
39982904 |
atcacaagcaagatgataaatagcatgtataccaacaccaattgctattgccagagctatcatctgcaaa |
39982835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 262 - 487
Target Start/End: Complemental strand, 39982706 - 39982481
Alignment:
| Q |
262 |
ttaccttgtggaagttgaggttgtcattaaaaggaacaacaatgcctagcttggtcttgctcctgagccatgtaacagtgtttcggcaaacaggtaacaa |
361 |
Q |
| |
|
|||||||||| || |||||| |||| ||||||||||| | ||||||||||||||| |||||||||| || | ||||||||||||||||| || || |
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| T |
39982706 |
ttaccttgtgaaaattgaggccatcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataa |
39982607 |
T |
|
| Q |
362 |
gataagagccatgttcaatttgagtgtctcagctgcacctttagccatgcaaacacaatggcccatcacctcataagcagcttttcttcgatactgcaca |
461 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||| || ||||| |||||||| ||||| || |||||||| | ||| |||| | |||| | ||| |||||| |
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|
| T |
39982606 |
gataatggccatgttcaatttaagtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcaca |
39982507 |
T |
|
| Q |
462 |
aatttgtaggcaaatagacctaacat |
487 |
Q |
| |
|
||||| |||||||||| |||||||| |
|
|
| T |
39982506 |
aatttaaaggcaaataggcctaacat |
39982481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 400
Target Start/End: Original strand, 46562120 - 46562257
Alignment:
| Q |
263 |
taccttgtggaagttgaggttgtcattaaaaggaacaacaatgcctagcttggtcttgctcctgagccatgtaacagtgtttcggcaaacaggtaacaag |
362 |
Q |
| |
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||||||||| ||||||| ||| |||| ||| |||||||||| |||| ||||||||||| |||||||| || | ||||||| |||||||| | || |
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| T |
46562120 |
taccttgtgaaagttgatgttatcatcaaagggaacaacaactcctaatttggtcttgcttctgagccaagtgatggtgtttctacaaacaggcattaaa |
46562219 |
T |
|
| Q |
363 |
ataagagccatgttcaatttgagtgtctcagctgcacc |
400 |
Q |
| |
|
|| | |||||||| || ||||| |||||||| ||||| |
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|
| T |
46562220 |
attaatgccatgttgaacttgagagtctcagcagcacc |
46562257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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