View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12950_low_4 (Length: 437)
Name: NF12950_low_4
Description: NF12950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12950_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 13615631 - 13615374
Alignment:
| Q |
18 |
ggtaggaatgaacggtgtggatgaaaccatgttggtaatggatccatttgaagaagtttagggcggtgagagggtggagattggggttgttgaagagaga |
117 |
Q |
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| T |
13615631 |
ggtaggaatgaacggtgtggatgaaaccatgttggtaatggatccatttgaagaagtttagggcggtgagagggtggagattggggttgttgaagagaga |
13615532 |
T |
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| Q |
118 |
agagagatgggttggggttaaagatgggattaaggtgttaaaggatggatttttacgccattggggttgtgagagaatggtgaagatctgtgaaggaaga |
217 |
Q |
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| T |
13615531 |
agagagatgagttggggttaaagatgggattaaggtgttaaaggatggatttttacgccattggggttgtaagagaatggtgaagatctgtgaaggaaga |
13615432 |
T |
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| Q |
218 |
tcttgctggagagagttgggagagagagatgaaaagggtttaaggagaagatgaaaaa |
275 |
Q |
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| T |
13615431 |
tcttgttggagagagttgggagagagagatgaaaagggtttaaggagaagatgaaaaa |
13615374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 304 - 423
Target Start/End: Complemental strand, 13615351 - 13615235
Alignment:
| Q |
304 |
atggtggagaagggtgaaaaggggtttagattttctcatttaaaagccatcaacaagaagaaagggttttgttttgtgttggggtttatgtattattcat |
403 |
Q |
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| T |
13615351 |
atggtggagaagagtgaaaaggggcttagattttctcatttaaaagccatcaacaagaagaaagggttttgttttgtgttggggtttatg---tattcat |
13615255 |
T |
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| Q |
404 |
ttggaagagggttttgttat |
423 |
Q |
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| T |
13615254 |
ttggaagagggttttgttat |
13615235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 306 - 422
Target Start/End: Original strand, 21748036 - 21748149
Alignment:
| Q |
306 |
ggtggagaagggtgaaaaggggtttagattttctcatttaaaagccatcaacaagaagaaagggttttgttttgtgttggggtttatgtattattcattt |
405 |
Q |
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| T |
21748036 |
ggtggagaagagtgaaaaggggtttagattttctcatttaaaagtcatcaacaagaagaaagggttttgttttgtgttggggtttatg---tgttcattt |
21748132 |
T |
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| Q |
406 |
ggaagagggttttgtta |
422 |
Q |
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| T |
21748133 |
ggaagagggttttgtta |
21748149 |
T |
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