View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12950_low_5 (Length: 378)
Name: NF12950_low_5
Description: NF12950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12950_low_5 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 223 - 378
Target Start/End: Complemental strand, 9733531 - 9733376
Alignment:
| Q |
223 |
catgaagttagtactaccttatttttatgtgtgtaactgaaaaaccaaaaacatgcatttaactctcatcatttctggttcatgttttctctctcatgag |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9733531 |
catgaagttagtactaccttatttttatgtgtgtaactgaaaaaccaaaaacatgcatttaactctcatcatttctggttcatgttttctctctcatgag |
9733432 |
T |
|
| Q |
323 |
ttattgatgggttcatctattagtggctactttcaaggagcttcttcttcttcatc |
378 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9733431 |
ttattgatgggttaatctattagtggctactttcaaggagcttcttcttcttcatc |
9733376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 9733752 - 9733608
Alignment:
| Q |
9 |
gacatcatctaaaggaaggaagtgaaaaacaactcttcaaaaagttggttttggttttgcagcttcaacaagtgaaatcaaatgagttaaacaaaaaagt |
108 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9733752 |
gacatcacctaaaggaaggaagagaaaaacaactcttcaaaaagttggttttggttttgcagcttcaacaagtgaaatcaaatgagttaaacaaaaaagt |
9733653 |
T |
|
| Q |
109 |
gatctttgatttt----cattgtcactcaccaacaaacccaagac |
149 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9733652 |
gatctttgattttcattcattgtcactcaccaacaaacccaagac |
9733608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University