View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12950_low_8 (Length: 332)

Name: NF12950_low_8
Description: NF12950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12950_low_8
NF12950_low_8
[»] chr2 (4 HSPs)
chr2 (1-315)||(37915406-37915720)
chr2 (1-282)||(37907233-37907537)
chr2 (161-278)||(37960512-37960629)
chr2 (72-120)||(37960703-37960751)
[»] chr8 (2 HSPs)
chr8 (168-315)||(3783715-3783862)
chr8 (77-131)||(3783597-3783651)


Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 37915406 - 37915720
Alignment:
Q  1 ttagtattgagtcgtgaagaagttcagaaaatgaagggatggatcattgataaatgtaaagactcaacaccacacatgtcaacttttgttgtaacatgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37915406 ttagtattgagtcgtgaagaagttcagaaaatgaagggatggatcattgataaatgtaaagactcaacaccacacatgtcaacttttgttgtaacatgtt 37915505  T
Q  101 ccttgatttggttttgtatggtcaaatcagaacaaagtaaaagtgatctagtgtacttcatgttttttgcagattgtcgtgatcgtcgtgaattttcatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37915506 ccttgatttggttttgtatggtcaaatcagaacaaagtaaaagtgatctagtgtacttcatgttttttgcagattgtcgtgatcgtcgtgaattttcatt 37915605  T
Q  201 atcgaaaacttattttggaaactgtcttgcttcttatactgtagttgtaaataggggtgagttagttggaaaagatggtattcttgtggcggcaaatgct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37915606 atcgaaaacttattttggaaactgtcttgcttcttatactgtagttgtaaataggggtgagttagttggaaaagatggtattcttgtggcggcaaatgct 37915705  T
Q  301 attgaacggaagata 315  Q
    |||||||||||||||    
T  37915706 attgaacggaagata 37915720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 37907233 - 37907537
Alignment:
Q  1 ttagtattgagtcgtgaagaagttcagaaaatgaagggatggatcattgataaatgtaaagact-----caacaccacacatgtcaacttttgttgtaac 95  Q
    |||||||||||||||||||||||||||||| | |||  |||| |  |||||||| |||||||       |||| || ||||||||||| |||||||||||    
T  37907233 ttagtattgagtcgtgaagaagttcagaaactaaagaaatgggttgttgataaaagtaaagaaattaaacaacgccgcacatgtcaacatttgttgtaac 37907332  T
Q  96 atgttccttgatttggttttgtatggtcaaatcagaacaaagtaaaagtgat------------------ctagtgtacttcatgttttttgcagattgt 177  Q
    ||||||||||||||||||||||||||| |||||||| ||||| |||||||||                  ||||| ||||||||||| ||||||||||||    
T  37907333 atgttccttgatttggttttgtatggtaaaatcagagcaaagcaaaagtgattgcgttggtgatgatgatctagtctacttcatgttctttgcagattgt 37907432  T
Q  178 cgtgatcgtcgtgaattttcattatcgaaaacttattttggaaactgtcttgcttcttatactgtagttgtaaataggggtgagttagttggaaaagatg 277  Q
    ||||| |||  ||||||||||||| | ||| ||||||||||||| ||| |||| |||||||  || |||||||| |||||||||||||||| ||||||||    
T  37907433 cgtgaccgttctgaattttcattagctaaatcttattttggaaattgtgttgcctcttataacgtggttgtaaaaaggggtgagttagttgaaaaagatg 37907532  T
Q  278 gtatt 282  Q
    |||||    
T  37907533 gtatt 37907537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 278
Target Start/End: Complemental strand, 37960629 - 37960512
Alignment:
Q  161 tgttttttgcagattgtcgtgatcgtcgtgaattttcattatcgaaaacttattttggaaactgtcttgcttcttatactgtagttgtaaataggggtga 260  Q
    ||||| ||||||||||||||||| |  ||||||| |||||| | ||||||||||||||||| |||||||| |||||||| || | |||||| || | |||    
T  37960629 tgtttcttgcagattgtcgtgatagcggtgaattgtcattaccaaaaacttattttggaaattgtcttgcatcttataccgtggctgtaaagagagatga 37960530  T
Q  261 gttagttggaaaagatgg 278  Q
    |||| |||||||| ||||    
T  37960529 gttaattggaaaaaatgg 37960512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 37960751 - 37960703
Alignment:
Q  72 acacatgtcaacttttgttgtaacatgttccttgatttggttttgtatg 120  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||    
T  37960751 acacttgtcaacttttgttgtaacaagttccttgatttggttttgtatg 37960703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 315
Target Start/End: Original strand, 3783715 - 3783862
Alignment:
Q  168 tgcagattgtcgtgatcgtcgtgaattttcattatcgaaaacttattttggaaactgtcttgcttcttatactgtagttgtaaataggggtgagttagtt 267  Q
    |||||||||||||||| ||| |||| |||||||| | |||| |||||||||||| ||||||||   | | | ||| |||||||| |||| ||||||||||    
T  3783715 tgcagattgtcgtgatagtcctgaaatttcattacccaaaaattattttggaaattgtcttgccagtaaaattgtggttgtaaagagggctgagttagtt 3783814  T
Q  268 ggaaaagatggtattcttgtggcggcaaatgctattgaacggaagata 315  Q
    |||| | |||| ||| ||| ||| ||||||| ||| ||| ||||||||    
T  3783815 ggaacaaatgggattgttgcggctgcaaatggtatcgaaaggaagata 3783862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 3783597 - 3783651
Alignment:
Q  77 tgtcaacttttgttgtaacatgttccttgatttggttttgtatggtcaaatcaga 131  Q
    ||||||||||||||||||||||||||||||||||||||||| || | ||||||||    
T  3783597 tgtcaacttttgttgtaacatgttccttgatttggttttgtttgataaaatcaga 3783651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University