View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12951_low_1 (Length: 459)
Name: NF12951_low_1
Description: NF12951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12951_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 51805882 - 51805442
Alignment:
| Q |
1 |
caccggcgattttcccatgtctgttttcaacctcaccaatcttgaaattctcaacttcaacgaaaacagtaaactcaatctttgggaattaccaaaaagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805882 |
caccggcgattttcccatgtctgttttcaacctcaccaatcttgaaattctcaacttcaacgaaaacagtaaactcaatctttgggaattaccaaaaagc |
51805783 |
T |
|
| Q |
101 |
tttgtaagattgaaaagtcttaaatccatgattttatcaacatgcatgttgcatggtcaaattccaccatccatatcaaatataacaacactcattgatc |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805782 |
tttgtaagattgagaagtcttaaatccatgattttatcaacatgcatgttgcatggtcaaattccaccatccatatcaaatataacaacactcattgatc |
51805683 |
T |
|
| Q |
201 |
ttgaattaagtggaaatttcctcacaggtcaaattccaaaagaacttggattgttgaaaaacttgcaacagcttgaactttactataactacttccttgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805682 |
ttgaattaagtggaaatttcctcacaggtcaaattccaaaagaacttggattgttgaaaaacttgcaacagcttgaactttactataactacttccttgt |
51805583 |
T |
|
| Q |
301 |
tggcagcatccctgaagagcttggaaatttaacagaacttgtcgatttagatatgtcggtaaacaaattaactggaacaatcccttcttctgtttgtaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51805582 |
tggcagcatccctgaagagcttggaaatttaacagaacttgtcgatttagatatgtcggtaaacaagttaactggaacaatcccttcttctgtttgtaaa |
51805483 |
T |
|
| Q |
401 |
cttccaaagcttcaggttctccaattctacaataacagtct |
441 |
Q |
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| T |
51805482 |
cttccaaagcttcaggttctccaattctacaataacagtct |
51805442 |
T |
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Back To:
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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 159 - 289
Target Start/End: Original strand, 20017340 - 20017470
Alignment:
| Q |
159 |
aaattccaccatccatatcaaatataacaacactcattgatcttgaattaagtggaaatttcctcacaggtcaaattccaaaagaacttggattgttgaa |
258 |
Q |
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|||| ||||||||||||||||| |||||||| |||||||||||||| ||||||| ||||||||| || |||||||||| ||| |||||||||||||| |
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| T |
20017340 |
aaatcccaccatccatatcaaacataacaaccctcattgatcttgagctaagtgggaatttcctcgcaagtcaaattccttcagagcttggattgttgaa |
20017439 |
T |
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| Q |
259 |
aaacttgcaacagcttgaactttactataac |
289 |
Q |
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| T |
20017440 |
aaacttgcaacagcttgaacattgctataac |
20017470 |
T |
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