View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12951_low_2 (Length: 392)
Name: NF12951_low_2
Description: NF12951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12951_low_2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 176 - 392
Target Start/End: Original strand, 48255725 - 48255941
Alignment:
| Q |
176 |
gaaacatgcactgtatttgtaacaaggaaacgtcgaaagtgtaaaacacgacccaatctaattgtgggccttacctcgttgtcttcatgtactactaaat |
275 |
Q |
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| T |
48255725 |
gaaacatgcactgtatttgtaacaaggaaacgtcgaaagtgtaaaacacgacccaatcaaattgtgggccttacctcgttgtcttcatgtactactaaat |
48255824 |
T |
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| Q |
276 |
tgacagcgacgctttctcctaccacaacacattttctttcgcactctcattctaagcgcgttatccttaatcacactttcccataaaaataccgttcgcc |
375 |
Q |
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| T |
48255825 |
tgacagcgacgctttctcctaccacaacgcattttctttcgcactctcattctgagcgcgttatccttaatcacactttcccgtaaaaataccgttcgcc |
48255924 |
T |
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| Q |
376 |
acgtttccctacccacc |
392 |
Q |
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| T |
48255925 |
acgtttccctacccacc |
48255941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 48255583 - 48255693
Alignment:
| Q |
19 |
actagtatttgattaagcaaaaatgggcgatagtgggacaactcatatccagaagaggaagaagtatacggcgattaacgtactaaacccaagcagaaag |
118 |
Q |
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| T |
48255583 |
actagtatttgattaagcaaaaatcggcgatagtgggacaactcatatccagaagaggaagaagtatacggcgattaacgtactaaacccaagcagaaag |
48255682 |
T |
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| Q |
119 |
cattggaactg |
129 |
Q |
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| T |
48255683 |
cattggaactg |
48255693 |
T |
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