View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12952_high_1 (Length: 1891)
Name: NF12952_high_1
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 1686; Significance: 0; HSPs: 25)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1686; E-Value: 0
Query Start/End: Original strand, 1 - 1882
Target Start/End: Complemental strand, 32167277 - 32165392
Alignment:
| Q |
1 |
tttactacttctcctaggttcttgtcacgtctggagaaaatgtcacagaagtacaaccacaatttgatgcaattgttaaatgtcccgggatggggataat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32167277 |
tttactacttctcctaggttcttgtcacatctggagaaaatgtcacagaagtacaaccacaatttgatgcaattgttaaatgtcccgggatggggataat |
32167178 |
T |
|
| Q |
101 |
tgttacagggatcgctcctccagagtccggatttgacttctacagtcgatatttctgcccgaaacatggaatcaatgaggtatgtggctaagaattacga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32167177 |
tgttacagggatcgctcctccagagtccggatttgacttctacagtcgatatttctgcccgaaacatggaatcaatgaggtatatggctaagaattacga |
32167078 |
T |
|
| Q |
201 |
ctagaatgtttcaatactgaatgtcgaagtaaagcttcagattttgatcttcgacattcaactgttaaactgcatcaagatatgaaaatagaagaaatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32167077 |
ctagaatgtttcaatactgaatgtcgaagtaaagcttcagattttgatcttcgacattcaactgttaaactgcatcaagatatgaaaatagaagaaatga |
32166978 |
T |
|
| Q |
301 |
gataatgttgttaataacctatatttgctttcaggatcctgtttgtgggagtgcacattgtggcttggccccctattggagcaagaagttggggaagtgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32166977 |
gataatgttgttaataacctatatttgctttcaggatcctgtttgtgggagtgcacattgtggcttggcaccctattggagcaagaagttggggaagtgt |
32166878 |
T |
|
| Q |
401 |
gatttaaaggcttatcaggtagtactgttatattactatcttttctattccctcattgtgattatctttgtcattgtggtactaatttttagaatacatt |
500 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32166877 |
gatttaaaggcttatcaggtagtactattatattactatcttttctattccctcattgtgattatctttgtcattgtggtactaatttttagaatacatt |
32166778 |
T |
|
| Q |
501 |
tgttcaggcatcagctagagggggaattctgaatattcaaattgatgaacaaaaacaaagagtgtttttgcgtgggaaggctgttacagtgatggaagga |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32166777 |
tgttcaggcatcagctagagggggaattctcaatattcatattgatgaacaaaaacaaagagtttttttgcgtgggaaggctgttacagtgatggaagga |
32166678 |
T |
|
| Q |
601 |
tctgttttggtttagtcctagtcctaacattgcagtcaaatacatgcaccaatacatgtaat-attactatcaaatgataaaattgttattggagcactt |
699 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32166677 |
tctgttttggtctagtcctagtcctaacattgcagtcaaatacatgcaccaatacatgtaataattactatcagatgataaaattgttattggagcactt |
32166578 |
T |
|
| Q |
700 |
aattattttggtctagtcctgagcattttgtgtatttgatatacacaaatcttggtttgagtgttgtaggatttattaagttgaataaattggtctggtg |
799 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32166577 |
aattattttggtctagtcctgagcattttgtgtatttgatatacacaaatcttggtttgagtgttgtaggatttattaagttgaataaattggtctggtg |
32166478 |
T |
|
| Q |
800 |
attgcttttgagttggcatcatctagtggaatagttgttcatattcatccaatgtatgagcagataaaaatgatattgatgtttggaaaccttgttaatg |
899 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32166477 |
attgcttttgagttggcatcatctagtggaatagttgttcatattcatccaatgcatgagcagataaaaatgatattgatgtttggaaaccttgttaatg |
32166378 |
T |
|
| Q |
900 |
tcatgaatagatgtcgtctatttgaactcttgtataactttggaaataatagaccaaaaatccgtattcggatgattataaaatcgtctataattcgatt |
999 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32166377 |
tcatgaatagatgtcgtctatttgaactcttgtataactttgcaaataatagaccaaaaatccgtattcggatgattataaaatcgtctataattcgatt |
32166278 |
T |
|
| Q |
1000 |
ttgacacttgaatactgaatcaagttgacgtctataattaaatgatattttgttgtgtgctctagatgacatgtctaaatggtcgtgaccatctaagtat |
1099 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32166277 |
ttgacacttgaatactgaatcaagttgacgtctataattgaatgatattttgttgtgtgctctagatgacatgtctaaatggtcctgaccatctaagtat |
32166178 |
T |
|
| Q |
1100 |
ttttcttgagttagaaacaagaaaaacaannnnnnnnnnaggtgaaagaaaaaacaaaatattagtgctgaaaactttattcctttttcttgtttttgtc |
1199 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32166177 |
ttttcttgagttagaaactagaaaaacaa--ttttttttaggtgaaagaaaaaacaaaatattagtgttgaaaactttattcctttttcttgtttttgtc |
32166080 |
T |
|
| Q |
1200 |
agaatcaacactctcgctcactatctctgaagtaccaaggacatggaaatccttaactttctacttaaaaaagctacaatggcctttattctataccgaa |
1299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32166079 |
tgaatcaacactctcgctcactatctctgaagtactaaggacatggaaatccttaactttctacttaaaaaagttacaatggcctttattctataccgaa |
32165980 |
T |
|
| Q |
1300 |
ctcagagtgtaacagcggattggtggaagaaatgctcacaagacaataatgtttggttgggactgcctcggagacaagacaaagtccaatggtagggatg |
1399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32165979 |
ctcagagtgtaacagcggattggtggaagaaatgctcgtaagacaataatgtttggttgggactgcctcggagacaagacaaagtccaatggtagggatg |
32165880 |
T |
|
| Q |
1400 |
taatgctgacattctaacgctgaaattaatatatattacttcattaaggtgggtgaaaggtttagaataatacatatcttgagaggtgatgatagaccta |
1499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32165879 |
taatgctgacattctaacgctgaaattaatatatattacttcattaaggtgggtgaaaggtttagaataatacatatcttgagaggtgatgatagaccta |
32165780 |
T |
|
| Q |
1500 |
aaaatgaagtatcaagttcagttggaaacaaccttggtatatcacatgagacactttcccttcttagcaattgcctattattataattataggggtccat |
1599 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32165779 |
aagatgaagtatcaagttcagttggaaacaaccttggtatatcacatgagacactttcccttcttagcaattgcctattattataattataggggtccat |
32165680 |
T |
|
| Q |
1600 |
attatttaatannnnnnnggtacagaggtccagattcaaaaca--tgtgtgtgtatttgattttcatt---tatatattattgaggtggatggactgtgt |
1694 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
32165679 |
attatttaatatttttttggtacagaggtccagattcaaaacatgtgtgtgtgtatttgattttcatttactatatattattgaggtggattgactgtgt |
32165580 |
T |
|
| Q |
1695 |
ccacagcattcataggggctttgaccagttttatctccaacacttgttccctcatcatcaaatggcaaagaaacatgtcaaatactacgtggtatgtttg |
1794 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32165579 |
ccacagcatccataggggctttgaccagttttatctccaacacttgttccctcatcatcaaatggcaaagaaacatgtcaaatactacgtggtatgtttg |
32165480 |
T |
|
| Q |
1795 |
cttatttatttaactgttaactgtatttgttattattactgtacnnnnnnncatagctgttgtgtgaatctgagtaatatgatgatgt |
1882 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32165479 |
cttatttatttaactgttaactgtatttgttattattactgtacaaaaaaacatagctgttgtgtgaatctgagtaatatgatgatgt |
32165392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 329 - 640
Target Start/End: Complemental strand, 32156581 - 32156272
Alignment:
| Q |
329 |
tttcaggatcctgtttgtgggagtgcacattgtggcttggccccctattggagcaagaagttggggaagtgtgatttaaaggcttatcaggtagtactgt |
428 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| | || |||||||||||||||||||||||||||||||| | |
|
|
| T |
32156581 |
tttcaggatccagtttgtgggagtgcacattgtggattggcatcctattggagcaagaaactaggaaagtgtgatttaaaggcttatcaggtagtactat |
32156482 |
T |
|
| Q |
429 |
tatattactatcttttctattccctcattgtgattatctttgtcattgtggtactaatttttagaatacatttgttcaggcatcagctagagggggaatt |
528 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||| ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32156481 |
tat--tactatcttttctattccctcattatgattatttttgttattgtggtactaaattttagattacatttgttcaggcatcagctagagggggaatt |
32156384 |
T |
|
| Q |
529 |
ctgaatattcaaattgatgaacaaaaacaaagagtgtttttgcgtgggaaggctgttacagtgatggaaggatctgttttggtttagtcctagtcctaac |
628 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| | ||||| |
|
|
| T |
32156383 |
ctcaatattcatattgatgaacaaaaacaaagagtgtttttgcgtgggaaggctgttacagtgatggaagggtgtgttttggtctagtcctatttctaac |
32156284 |
T |
|
| Q |
629 |
attgcagtcaaa |
640 |
Q |
| |
|
||| |||||||| |
|
|
| T |
32156283 |
atttcagtcaaa |
32156272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 2e-56
Query Start/End: Original strand, 723 - 961
Target Start/End: Complemental strand, 27261378 - 27261143
Alignment:
| Q |
723 |
cattttgtgtatttgatatacacaaatcttggtttgagtgttgtaggatttattaagttgaataaattggtctggtgattgcttttgagttggcatcatc |
822 |
Q |
| |
|
|||||||||||||| |||| |||||| | | || |||||||||||||||||||| | |||||||||||||||| ||||| ||||||||||||| | |
|
|
| T |
27261378 |
cattttgtgtatttcatattcacaaaccattgtgtgagtgttgtaggatttattgatttgaataaattggtct------tgcttatgagttggcatcacc |
27261285 |
T |
|
| Q |
823 |
tagtggaatagttgttcatattcatccaatgtatgagcagataaaaatgatattgatgtttggaaaccttgttaatgtcatgaata---gatgtcgtcta |
919 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||||||||||||| |||| |||||||||||||| ||| ||||||||||||||||||| |||||| | || |
|
|
| T |
27261284 |
tagtggaatagtggttcgtattcatcctatgtatgagcagaggaaaaggatattgatgtttgtaaagcttgttaatgtcatgaatattggatgtctttta |
27261185 |
T |
|
| Q |
920 |
tttgaactcttgtataactttggaaataatagaccaaaaatc |
961 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| |||||| |
|
|
| T |
27261184 |
tttgaactcttgtataattttgcaaataatagaccgaaaatc |
27261143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 7e-47
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 32156832 - 32156660
Alignment:
| Q |
9 |
ttctcctaggttcttgtcacgtctggagaaaatgtcacagaagtacaaccacaatttgatgcaattgttaaatgtcccgggatggggataattgttacag |
108 |
Q |
| |
|
|||||||||||| ||||||| |||||| | ||||||| |||||| ||||||||||||||||||||||| |||| ||| || | ||||||||||||||||| |
|
|
| T |
32156832 |
ttctcctaggttgttgtcacatctggaaagaatgtcatagaagtgcaaccacaatttgatgcaattgtaaaatctcctggaagggggataattgttacag |
32156733 |
T |
|
| Q |
109 |
ggatcgctcctccagagtccggatttgacttctacagtcgatatttctgcccgaaacatggaatcaatgaggt |
181 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||| ||||||||| ||| |||| | |||||||| |
|
|
| T |
32156732 |
ggatcgctcctccagagtcgggatttgatttctacagtcgatttttctgcccaaaatttggagtaaatgaggt |
32156660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-38
Query Start/End: Original strand, 757 - 961
Target Start/End: Complemental strand, 27336372 - 27336169
Alignment:
| Q |
757 |
tgagtgttgtaggatttattaagttgaataaattggtctggtgattgcttttgagttggcatcatctagtggaatagttgttcatattcatccaatgtat |
856 |
Q |
| |
|
|||||||||||| ||||||| | |||||||||||||||| ||||| || |||||||||| ||||||||||||| |||| ||||||||| |||||| |
|
|
| T |
27336372 |
tgagtgttgtagaatttattgatttgaataaattggtct------tgcttatgggttggcatcacctagtggaatagtggttcgtattcatcctatgtat |
27336279 |
T |
|
| Q |
857 |
gagcagataaaaatgatattgatgtttggaaaccttgttaatgtcatgaa-----tagatgtcgtctatttgaactcttgtataactttggaaataatag |
951 |
Q |
| |
|
||||||| |||| |||||||||||||| ||| ||||||||||||||||| | || ||| | ||||||||||||||||||| |||| ||||||||| |
|
|
| T |
27336278 |
gagcagaggaaaaggatattgatgtttgtaaagcttgttaatgtcatgaatctattggacgtcttttatttgaactcttgtataattttgcaaataatag |
27336179 |
T |
|
| Q |
952 |
accaaaaatc |
961 |
Q |
| |
|
||| |||||| |
|
|
| T |
27336178 |
accgaaaatc |
27336169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-38
Query Start/End: Original strand, 462 - 640
Target Start/End: Complemental strand, 32163768 - 32163590
Alignment:
| Q |
462 |
ttatctttgtcattgtggtactaatttttagaatacatttgttcaggcatcagctagagggggaattctgaatattcaaattgatgaacaaaaacaaaga |
561 |
Q |
| |
|
|||||| ||||||||| ||||||| | |||| ||||||||| ||||||||| |||| || ||| |||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
32163768 |
ttatctctgtcattgttgtactaaactgtagattacatttgtgcaggcatcaactaggggaggagttctcaatattcatattgatgaacagaaacaaaga |
32163669 |
T |
|
| Q |
562 |
gtgtttttgcgtgggaaggctgttacagtgatggaaggatctgttttggtttagtcctagtcctaacattgcagtcaaa |
640 |
Q |
| |
|
|||||||| |||||||||||| ||||||| |||||||| | ||||||||| || ||| | || |||||||||||||||| |
|
|
| T |
32163668 |
gtgtttttacgtgggaaggctattacagttatggaagggtgtgttttggtctaatccaattcttaacattgcagtcaaa |
32163590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 77; E-Value: 6e-35
Query Start/End: Original strand, 277 - 421
Target Start/End: Complemental strand, 32164154 - 32164011
Alignment:
| Q |
277 |
aagatatgaaaatagaagaaatgagataatgttgttaataacctatatttgctttcaggatcctgtttgtgggagtgcacattgtggcttggccccctat |
376 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||| ||||| ||||||| || ||||||||||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
32164154 |
aagatatgaaaatagaagaaattagataatattgttgataactcatatttggtt-caggatcctgtttgtgggagtgcccactgtggcttggcatcctat |
32164056 |
T |
|
| Q |
377 |
tggagcaagaagttggggaagtgtgatttaaaggcttatcaggta |
421 |
Q |
| |
|
|||||||||||| | | || |||||||||||||||||||||||| |
|
|
| T |
32164055 |
tggagcaagaagctcgaaaaatgtgatttaaaggcttatcaggta |
32164011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 75; E-Value: 1e-33
Query Start/End: Original strand, 292 - 415
Target Start/End: Complemental strand, 27261956 - 27261831
Alignment:
| Q |
292 |
aagaaatgagataatgttgttaataacctatattt--gctttcaggatcctgtttgtgggagtgcacattgtggcttggccccctattggagcaagaagt |
389 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
27261956 |
aagaaatgagataatgttgttgataactcatgtttactctttcaggatcctgtttgtgggagtgcacattgtggcttggcaccctattggagcgagaaac |
27261857 |
T |
|
| Q |
390 |
tggggaagtgtgatttaaaggcttat |
415 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
27261856 |
tggggaagtgtgatttaaaagcttat |
27261831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 277 - 415
Target Start/End: Complemental strand, 27339893 - 27339752
Alignment:
| Q |
277 |
aagatatgaaaatagaa-gaaatgagataatgttgttaataacctatattt--gctttcaggatcctgtttgtgggagtgcacattgtggcttggccccc |
373 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||| ||||| || ||| ||||||||||||||||||||||| |||||||||||| ||||| ||| |
|
|
| T |
27339893 |
aagatatgaaaatagaaagaaatgagataatattgttgataactcatgtttactctttcaggatcctgtttgtgggactgcacattgtggtttggcaccc |
27339794 |
T |
|
| Q |
374 |
tattggagcaagaagttggggaagtgtgatttaaaggcttat |
415 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| |||||| |
|
|
| T |
27339793 |
tattggagcgagaaactggggaagtgtgatttaaaagcttat |
27339752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 70; E-Value: 9e-31
Query Start/End: Original strand, 723 - 908
Target Start/End: Original strand, 27276359 - 27276549
Alignment:
| Q |
723 |
cattttgtgtatttgatatacacaaatcttggtttgagtgttgtaggatttattaagttgaataaat----tggtctgg-tgattgcttttgagttggca |
817 |
Q |
| |
|
|||||||||||||| |||| |||||| | | || |||||||||||||||||||| | |||||||||| |||||| | | || || |||||||||| |
|
|
| T |
27276359 |
cattttgtgtatttcatattcacaaaccattgtgtgagtgttgtaggatttattgatttgaataaataaattggtcttgcttatgagttatgagttggca |
27276458 |
T |
|
| Q |
818 |
tcatctagtggaatagttgttcatattcatccaatgtatgagcagataaaaatgatattgatgtttggaaaccttgttaatgtcatgaata |
908 |
Q |
| |
|
||||||||||||||||| |||| ||| ||||| |||||||| |||| |||| |||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
27276459 |
tcatctagtggaatagtggttcgtatccatcctatgtatgaacagaagaaaaagatattgatgtttgtaaaacttgttaatgtcatgaata |
27276549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 27321641 - 27321469
Alignment:
| Q |
15 |
taggttcttgtcacgtctggagaaaatgtcacagaagtacaaccacaatttgatgcaattgttaaatgtcccgggatgggga-taattgttacagggatc |
113 |
Q |
| |
|
|||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||| | | ||||| | | ||| ||||| ||| |||||||||||| |
|
|
| T |
27321641 |
taggttgttgtcacatctggaaaaaatgtcttagaagtacaaccacaatttgatgcactagctaaat-tatctggaaggggagtaagtgttacagggatt |
27321543 |
T |
|
| Q |
114 |
gctcctccagagtccggatttgacttctacagtcgatatttctgcccgaaacatggaatcaatgaggtatgtgg |
187 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||| |||| |
|
|
| T |
27321542 |
gcgcctcctgagtccggatttgacttctacagtcgattcttctccccaaaatttggaatcaatgaggtaagtgg |
27321469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 64; E-Value: 4e-27
Query Start/End: Original strand, 9 - 187
Target Start/End: Complemental strand, 32164598 - 32164420
Alignment:
| Q |
9 |
ttctcctaggttcttgtcacgtctggagaaaatgtcacagaagtacaaccacaatttgatgcaattgttaaatgtcccgggatggggat-aattgttaca |
107 |
Q |
| |
|
|||| ||||||| | ||| | |||||| |||||||||||||| |||| |||||| | |||||||||| ||||| | || ||| |||||| ||||||||| |
|
|
| T |
32164598 |
ttcttctaggttgtggtcgcatctggaaaaaatgtcacagaaatacagccacaactggatgcaattgctaaat-tacctggaaggggattaattgttacc |
32164500 |
T |
|
| Q |
108 |
gggatcgctcctccagagtccggatttgacttctacagtcgatatttctgcccgaaacatggaatcaatgaggtatgtgg |
187 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||| ||| ||| ||| |||||||||||||||| |||| |
|
|
| T |
32164499 |
gggattgctcctccagagtctggatttgacttctacagtcgattcttcgccccaaaatttggaatcaatgaggtaagtgg |
32164420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 328 - 415
Target Start/End: Complemental strand, 27320902 - 27320815
Alignment:
| Q |
328 |
ctttcaggatcctgtttgtgggagtgcacattgtggcttggccccctattggagcaagaagttggggaagtgtgatttaaaggcttat |
415 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||| |||||||||||| | || ||||||||||||||||||| |||||| |
|
|
| T |
27320902 |
cttttaggatcctgtttgtgggactgcacattgtggcttggcaccctattggagcgaaaaactggggaagtgtgatttaaaagcttat |
27320815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 50; E-Value: 8e-19
Query Start/End: Original strand, 480 - 617
Target Start/End: Original strand, 27333904 - 27334041
Alignment:
| Q |
480 |
tactaatttttagaatacatttgttcaggcatcagctagagggggaattctgaatattcaaattgatgaacaaaaacaaagagtgtttttgcgtgggaag |
579 |
Q |
| |
|
||||||||| |||| ||||||||| |||||||| ||||||| ||| | | |||||||| |||||||||||||| |||||||||||| | ||||| ||| |
|
|
| T |
27333904 |
tactaatttgtagattacatttgtctaggcatcaactagaggaggagctatcaatattcatattgatgaacaaaatcaaagagtgtttattcgtggaaag |
27334003 |
T |
|
| Q |
580 |
gctgttacagtgatggaaggatctgttttggtttagtc |
617 |
Q |
| |
|
||| |||| || |||||||| | |||| |||| ||||| |
|
|
| T |
27334004 |
gctattactgttatggaagggtgtgttctggtctagtc |
27334041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 47; E-Value: 5e-17
Query Start/End: Original strand, 542 - 636
Target Start/End: Original strand, 27362738 - 27362832
Alignment:
| Q |
542 |
ttgatgaacaaaaacaaagagtgtttttgcgtgggaaggctgttacagtgatggaaggatctgttttggtttagtcctagtcctaacattgcagt |
636 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||| | |||| |||| ||| | | ||||| ||||||||| |
|
|
| T |
27362738 |
ttgatgagcaaaaacaaagagtgtttttgcgtgggaaggctattatagtgatggaagggtgtgttctggtctaggcttgttcctagcattgcagt |
27362832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 730 - 905
Target Start/End: Original strand, 36482487 - 36482661
Alignment:
| Q |
730 |
tgtatttgatatacacaaatc-ttggtttgagtgttgtaggatttattaagttgaataaattggtctggtgattgcttttgagttggcatcatctagtgg |
828 |
Q |
| |
|
||||||| ||||||||||| | ||||| |||| || || |||||||| |||| |||||||||||| | | ||||||||| ||| | |||||||| |||| |
|
|
| T |
36482487 |
tgtattttatatacacaaaaccttggtgtgagcgtaatatgatttattgagttaaataaattggtccgataattgcttttaagtagacatcatcttgtgg |
36482586 |
T |
|
| Q |
829 |
aatagttgttcatattcatccaatgtatgagcagataaaaatgatattgatgtttggaaaccttgttaatgtcatga |
905 |
Q |
| |
|
| |||| ||||||||||||||| || ||| ||| ||| ||||||||||| |||||| ||||||||||||||| |
|
|
| T |
36482587 |
aggagtt--tcatattcatccaatttaagagaagagtaaagggatattgatgtatggaaatgttgttaatgtcatga |
36482661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 730 - 905
Target Start/End: Original strand, 36485005 - 36485179
Alignment:
| Q |
730 |
tgtatttgatatacacaaatc-ttggtttgagtgttgtaggatttattaagttgaataaattggtctggtgattgcttttgagttggcatcatctagtgg |
828 |
Q |
| |
|
||||||| ||||||||||| | ||||| ||||||| |||||||||||| |||| ||||||||| | ||| |||||||| |||| | ||||| || |||| |
|
|
| T |
36485005 |
tgtattttatatacacaaaaccttggtgtgagtgtagtaggatttattgagttaaataaattgattcggtaattgctttcgagtagacatcaccttgtgg |
36485104 |
T |
|
| Q |
829 |
aatagttgttcatattcatccaatgtatgagcagataaaaatgatattgatgtttggaaaccttgttaatgtcatga |
905 |
Q |
| |
|
| ||| ||||||||||||| || || ||| ||| ||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
36485105 |
aggagt--ttcatattcatcctatttaagagaagagcaaatgaatattgatgtttggaaatgttgttaatgtcatga |
36485179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 451 - 614
Target Start/End: Complemental strand, 27261600 - 27261431
Alignment:
| Q |
451 |
cctcattgtgattatctttgtcattgtggtactaatttttagaataca------tttgttcaggcatcagctagagggggaattctgaatattcaaattg |
544 |
Q |
| |
|
|||||||| | |||||||||||||||| || |||||| |||| |||| ||||| ||||||||| ||||||| ||| ||| || ||||| ||| |
|
|
| T |
27261600 |
cctcattggggttatctttgtcattgttgttttaatttatagattacaattgcatttgtgcaggcatcaactagaggaggagctcttaacattcatgttg |
27261501 |
T |
|
| Q |
545 |
atgaacaaaaacaaagagtgtttttgcgtgggaaggctgttacagtgatggaaggatctgttttggttta |
614 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||| || || ||||| |||| | |||| ||||||| |
|
|
| T |
27261500 |
ataaacaaaaacaaagggtgtttttgcgtgggaaggccgtaacggtgattaaagggtatgttctggttta |
27261431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 758 - 950
Target Start/End: Complemental strand, 27319526 - 27319346
Alignment:
| Q |
758 |
gagtgttgtaggatttattaagttgaataaattggtctggtgattgcttttgagttggcatcatctagtggaatagttgttcatattcatccaatgtatg |
857 |
Q |
| |
|
||||||||||||||||||| | || ||||||||||||| ||||| |||||||||||| ||||| ||||||| ||| ||||||||| ||||||| |
|
|
| T |
27319526 |
gagtgttgtaggatttattgatttcaataaattggtct------tgcttatgagttggcatcccctagtagaatagtggtttgtattcatcctatgtatg |
27319433 |
T |
|
| Q |
858 |
agcagataaaaatgatattgatgtttggaaaccttgttaatgtcatgaata---gatgtcgtctatttgaactcttgtataactttggaaataata |
950 |
Q |
| |
|
|||| | |||| |||||| ||| ||||||||||||||||||| |||||| |||||||| ||||||||||| |||| |||||||| |
|
|
| T |
27319432 |
agcataggaaaaggatatt---------aaagcttgttaatgtcatgaatattggatgtctcctatttgagctcttgtataattttgcaaataata |
27319346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 27347596 - 27347455
Alignment:
| Q |
9 |
ttctcctaggttcttgtcacgtctggagaaaatgtcacagaagtacaaccacaatttgatgcaattgttaaatgtcccgggatgggga-taattgttaca |
107 |
Q |
| |
|
||||| |||||| || |||| |||||| ||| |||| |||||||||| |||||||||||||| | | ||||| | | ||| ||||| ||| ||||||| |
|
|
| T |
27347596 |
ttctcttaggttgttctcacatctggaaaaattgtcttagaagtacaagcacaatttgatgcactagctaaat-tatctggaaggggagtaagtgttaca |
27347498 |
T |
|
| Q |
108 |
gggatcgctcctccagagtccggatttgacttctacagtcgat |
150 |
Q |
| |
|
||||| || ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
27347497 |
gggattgcacctcctgagtcaggatttgacttctacagtcgat |
27347455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 426
Target Start/End: Original strand, 27362538 - 27362632
Alignment:
| Q |
332 |
caggatcctgtttgtgggagtgcacattgtggcttggccccctattggagcaagaagttggggaagtgtgatttaaaggcttatcaggtagtact |
426 |
Q |
| |
|
||||||| ||| ||||| |||| |||||||| ||||| ||||||||||||||||| | || || |||||||||||||||||||||||| |||| |
|
|
| T |
27362538 |
caggatcttgtctgtggtagtgtccattgtggtttggcatcctattggagcaagaagcttggaaaatgtgatttaaaggcttatcaggtactact |
27362632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 27262586 - 27262419
Alignment:
| Q |
15 |
taggttcttgtcacgtctggagaaaatgtcacagaagtacaaccacaatttgatgcaattgttaaatgtcccgggatgggga-taattgttacagggatc |
113 |
Q |
| |
|
|||||| || |||| |||||| ||||||| ||||||||||||||| ||||||||| | | ||||| | | ||| ||||| ||| |||||||||||| |
|
|
| T |
27262586 |
taggttgttctcacatctggaacaaatgtcttagaagtacaaccacattttgatgcactagctaaat-tatctggaaggggagtaagtgttacagggatt |
27262488 |
T |
|
| Q |
114 |
gctcctccagagtccggatttgacttctacagtcgatatttctgcccgaaacatggaatcaatgaggta |
182 |
Q |
| |
|
| ||||| || || |||||||||||||||||||||| |||| ||| ||| |||||||||||||||| |
|
|
| T |
27262487 |
gtgcctcctgattcgggatttgacttctacagtcgattcttctccccaaaatttggaatcaatgaggta |
27262419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000007
Query Start/End: Original strand, 495 - 614
Target Start/End: Complemental strand, 27336576 - 27336457
Alignment:
| Q |
495 |
tacatttgttcaggcatcagctagagggggaattctgaatattcaaattgatgaacaaaaacaaagagtgtttttgcgtgggaaggctgttacagtgatg |
594 |
Q |
| |
|
||||||||| ||||||||| ||| ||| ||| ||| || ||||| ||||| |||| |||||||| |||||||||||||||||||| || || ||||| |
|
|
| T |
27336576 |
tacatttgtgcaggcatcaactaaaggaggagctcttaacattcatgttgataaacagaaacaaagggtgtttttgcgtgggaaggccgtaacggtgatt |
27336477 |
T |
|
| Q |
595 |
gaaggatctgttttggttta |
614 |
Q |
| |
|
||||| | |||| ||||||| |
|
|
| T |
27336476 |
gaagggtatgttctggttta |
27336457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 421
Target Start/End: Original strand, 27333788 - 27333852
Alignment:
| Q |
357 |
attgtggcttggccccctattggagcaagaagttggggaagtgtgatttaaaggcttatcaggta |
421 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| |||| || |||||||||||||||||| ||||| |
|
|
| T |
27333788 |
attgtagcttggcatcctattggagcaagaagctgggaaaatgtgatttaaaggcttatgaggta |
27333852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 599
Target Start/End: Complemental strand, 27319860 - 27319756
Alignment:
| Q |
495 |
tacatttgttcaggcatcagctagagggggaattctgaatattcaaattgatgaacaaaaacaaagagtgtttttgcgtgggaaggctgttacagtgatg |
594 |
Q |
| |
|
||||||| | ||||||||| | ||||| ||| ||| || ||||| ||||| |||| |||||||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
27319860 |
tacatttatgcaggcatcaacaagaggaggagctctaaacattcatgttgataaacagaaacaaagggtgtttttgcgtgggaagggcgttacggtgatt |
27319761 |
T |
|
| Q |
595 |
gaagg |
599 |
Q |
| |
|
||||| |
|
|
| T |
27319760 |
gaagg |
27319756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 5e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-23
Query Start/End: Original strand, 495 - 599
Target Start/End: Original strand, 44291981 - 44292085
Alignment:
| Q |
495 |
tacatttgttcaggcatcagctagagggggaattctgaatattcaaattgatgaacaaaaacaaagagtgtttttgcgtgggaaggctgttacagtgatg |
594 |
Q |
| |
|
||||||||| ||| ||||| | ||||||||| |||| |||||||| |||||||||| || ||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
44291981 |
tacatttgtgcagacatcaacaagagggggagttctcaatattcatattgatgaacgcaagcaaagagtgtttttgcgtgggaaagctattacagtgatg |
44292080 |
T |
|
| Q |
595 |
gaagg |
599 |
Q |
| |
|
||||| |
|
|
| T |
44292081 |
gaagg |
44292085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 329 - 421
Target Start/End: Original strand, 44291818 - 44291910
Alignment:
| Q |
329 |
tttcaggatcctgtttgtgggagtgcacattgtggcttggccccctattggagcaagaagttggggaagtgtgatttaaaggcttatcaggta |
421 |
Q |
| |
|
|||||||||||||||||||| | |||||||| ||| |||| |||||||||| |||||| |||| |||||||||||||||||||| |||||| |
|
|
| T |
44291818 |
tttcaggatcctgtttgtggcactgcacatttaggcatggcatcctattggagtaagaagctgggaaagtgtgatttaaaggcttaccaggta |
44291910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 182
Target Start/End: Original strand, 44291582 - 44291725
Alignment:
| Q |
39 |
aatgtcacagaagtacaaccacaatttgatgcaattgttaaatgtcccgggatgggga-taattgttacagggatcgctcctccagagtccggatttgac |
137 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||| ||||| | || | | ||||| ||| |||| |||| | || ||||| ||||| ||||||||| |
|
|
| T |
44291582 |
aatgtgacagaagtacaaccacattttgatgcaatttataaat-tacctgtaaggggagtaagtgtttcaggagttgcacctcctgagtctggatttgac |
44291680 |
T |
|
| Q |
138 |
ttctacagtcgatatttctgcccgaaacatggaatcaatgaggta |
182 |
Q |
| |
|
|||||||| |||| ||||| || ||| |||||||||||||||| |
|
|
| T |
44291681 |
ttctacagccgattcttctgtccaaaaattggaatcaatgaggta |
44291725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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