View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_high_11 (Length: 631)
Name: NF12952_high_11
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 4 - 614
Target Start/End: Complemental strand, 41116636 - 41116026
Alignment:
| Q |
4 |
atgtcgaagaatatattgggccctcaatgtactcaatcggttggaattattgcaactttcttagtatctggattaatgcatgagcttctattttaccatg |
103 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41116636 |
atgtccaagactatattgggccctcaatgtactcaatcggttggaattattgcaactttcttagtgtctggattaatgcatgagcttctattttaccatg |
41116537 |
T |
|
| Q |
104 |
taacacatgttacacccacgtgggaagtaacatgcttctttatgcttcatggggtgtgtgtagttgtggagattggtgtgaagaagtggttggatcataa |
203 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41116536 |
tcacacatgttacacccacgtgggaagtaacatgcttctttatgcttcatggggtgtgtgtagttgtggagattggtgtgaagaagtggttggatcataa |
41116437 |
T |
|
| Q |
204 |
atggagagtacactgggccatatctggtcccactacggtggtgtttgtggtgtccactgctgcatggctattctttccaccgttgttacgtgatggtgct |
303 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41116436 |
atggagagtacattgggccatatctggtcccactacggtggtgtttgtggtgtccactgctgcatggctattctttccaccgttgttacgtgatggtgct |
41116337 |
T |
|
| Q |
304 |
gataagagaaccattgaggagttcaaattttttgattgtttagtgggaaagttttaggttgaacttgttttggagtcttttgagcaggcagggttttatt |
403 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41116336 |
gatcagagaaccattgaggagttcaaattttttgattgtttagtgggaatgttttaggttgaacttgttttggagtcttttgagcaggcagggttttatt |
41116237 |
T |
|
| Q |
404 |
ttttggatatatgttgtctcattggagcaatttaaagtctgcagaagctgttgatatttcagaggcattttctggttctgttgttgtttctctgagatgc |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41116236 |
ttttggatatatgttgtctcattggagcaatttaaagtctgcagaagctgttgatatttcagaggcattttctggttctgttgttgtttctctgagatgc |
41116137 |
T |
|
| Q |
504 |
ttcagtctcaccatcttgttcaggaagcatcctctgataagctctattgctgttctgccacatggtggaaatttccccaatttctgtcctttggaattgg |
603 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41116136 |
ttcagtctcatcatcttgttcaggaagcatcctctgataagctctattgctgttctgccacatggtggaaatttccccaatttctgtcctttggaattgg |
41116037 |
T |
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| Q |
604 |
aggattctttt |
614 |
Q |
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||||||||||| |
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| T |
41116036 |
aggattctttt |
41116026 |
T |
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