View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_high_18 (Length: 462)
Name: NF12952_high_18
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 52882479 - 52882932
Alignment:
| Q |
1 |
ctaccatatcacagagtcacatgttttgatgaaatttcaaccttacataacataatactaccctctctgccaggatagtttatccaaatccaatggttgt |
100 |
Q |
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| T |
52882479 |
ctaccataacacagagtcacatgttttgatgaaatttcaaccttacataacataatactaccctctctgccaggatagtttatccaaatccaatggttgt |
52882578 |
T |
|
| Q |
101 |
ggggagcccatgtcactcacctgtaatgataaggtacgtacagccaaattcaattaactttctttatttggatttaattaattttaccttacacgtcttt |
200 |
Q |
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| T |
52882579 |
ggggagcccatgtcactcacctgtaatgataaggtacgtacagccaaattcaattaactttctttatttggatttaattaattttaccttacacgtcttt |
52882678 |
T |
|
| Q |
201 |
taaacaaattaattcaccttttttatgaagaaacaagtacattcacgaaaacatagacaccttttttagccaaaaatcaaaacggtgaattaaatataat |
300 |
Q |
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| T |
52882679 |
taaacaaattaattcaccttttttatgaagaaacaagtacattcacgaaaacatagacaccttttttagccaaaaatcaaaacggtgaattaaacataat |
52882778 |
T |
|
| Q |
301 |
attatattaaaaattaaactgtgataattttttgaaaaatacgaaacc--tatagactatagtatgacaaaaggggccataaaatttgacc-cnnnnnnn |
397 |
Q |
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| T |
52882779 |
attatattaaaaattaaactgtgataattttttgaaaaatacgaaacctatatagactatagttggacaaaagggaccataaaatttgaccaaaaaaaaa |
52882878 |
T |
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| Q |
398 |
ngggaccataagataaataattttcttgtaaataatgttttttccgttgtctgt |
451 |
Q |
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| T |
52882879 |
agggaccataagataaataattttcttgtaaataatgttttttccgttgtctgt |
52882932 |
T |
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