View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12952_high_21 (Length: 424)

Name: NF12952_high_21
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12952_high_21
NF12952_high_21
[»] chr6 (20 HSPs)
chr6 (30-424)||(31291135-31291528)
chr6 (144-393)||(27652367-27652616)
chr6 (102-279)||(26627915-26628092)
chr6 (102-279)||(26733892-26734069)
chr6 (97-242)||(27702399-27702544)
chr6 (97-190)||(27714166-27714259)
chr6 (313-392)||(27422666-27422746)
chr6 (294-378)||(26629528-26629612)
chr6 (294-378)||(26735504-26735588)
chr6 (102-279)||(26828269-26828446)
chr6 (96-260)||(26889989-26890151)
chr6 (97-182)||(27422553-27422638)
chr6 (313-380)||(26651015-26651082)
chr6 (313-380)||(26756983-26757050)
chr6 (322-392)||(26966021-26966092)
chr6 (313-390)||(26964250-26964325)
chr6 (97-182)||(26966104-26966189)
chr6 (100-182)||(26631460-26631542)
chr6 (100-182)||(26737435-26737517)
chr6 (157-251)||(26853552-26853646)
[»] chr4 (6 HSPs)
chr4 (228-384)||(18692562-18692718)
chr4 (228-334)||(18674491-18674597)
chr4 (228-323)||(18719061-18719156)
chr4 (157-195)||(18692521-18692559)
chr4 (157-195)||(18719020-18719058)
chr4 (336-376)||(18719155-18719195)
[»] scaffold0349 (1 HSPs)
scaffold0349 (97-190)||(17685-17778)
[»] chr8 (1 HSPs)
chr8 (97-190)||(29270059-29270152)
[»] scaffold0003 (2 HSPs)
scaffold0003 (313-392)||(64617-64697)
scaffold0003 (97-182)||(64725-64810)


Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 30 - 424
Target Start/End: Complemental strand, 31291528 - 31291135
Alignment:
Q  30 ctaatcctaggttgtgatattctatgaaccagacactaaacatgacactgacacgttgacaattggaaaatggccagatgactacagattgtttcctggc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||    
T  31291528 ctaatcctaggttgtgatattctatgaaccagacactaaacatgacactgacacgttgacaattggaaaatagccagatgattacagatggtttcctggc 31291429  T
Q  130 aattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgcgtaaattaccgactacaggctgaattcatcaagaatgcattcttcat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31291428 aattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgcgtaaattaccgactacaggctgaattcatcaagaatgcattcttcat 31291329  T
Q  230 gttcaattttatgggagagaatgttgtttaagaatgtggatagggagattttatttagatattagaaacataacttagtcatttttatttcaacatgaga 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31291328 gttcaattttatgggagagaatgttgtttaagaatgtggatagggagattttatttagatattagaaacataacttagtcatttttatttcaacatgaga 31291229  T
Q  330 ggatccactcttgaaattgtaatacacaccattatgcagaaaacaaaaattctaacatgttacagtcctaaaaaataagaaaataaagtgatgaa 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31291228 ggatccactcttgaaattgtaatacacaccattatgcagaaaacaaaaattctaacatgttacagtccta-aaaataagaaaataaagtgatgaa 31291135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 144 - 393
Target Start/End: Original strand, 27652367 - 27652616
Alignment:
Q  144 gaacaagaaaatacttagtttttgttagagaaaagttgcgtaaattaccgactacaggctgaattcatcaagaatgcattcttcatgttcaattttatgg 243  Q
    ||||||| |||| ||||||||| ||||||||||||||||||| ||||||| | |||||||||| || |   ||| | |||||  ||||||||||  |||     
T  27652367 gaacaagtaaatgcttagttttggttagagaaaagttgcgtatattaccggcaacaggctgaaatcgttgggaaaggattctctatgttcaatta-atga 27652465  T
Q  244 gagagaatgttgtttaagaatgtggatagggagattttatttagatattagaaacataactt-agtcatttttatttcaacatgagaggatccactcttg 342  Q
    |||| ||||||||||||  ||| |||||||||||||     |||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||||    
T  27652466 gagaaaatgttgtttaaacatggggatagggagattaagggtagatattagaaacatcactttactcatgtttatttcaacatgagaggatccactcttg 27652565  T
Q  343 aaattgtaatacacaccattatgcagaaaacaaaaattctaacatgttaca 393  Q
    ||||| | |||||||||| ||||||||||||||  |||||| |||||||||    
T  27652566 aaattttcatacacaccactatgcagaaaacaaccattctaccatgttaca 27652616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 102 - 279
Target Start/End: Complemental strand, 26628092 - 26627915
Alignment:
Q  102 gccagatgactacagattgtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgcgtaaattaccgactacagg 201  Q
    |||||||||||| |  | |||||||| ||||  ||| || |||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  26628092 gccagatgactaaatgtggtttcctgacaatgtacagtcaaagaacaaaaaaatacttagttttggttagagaaaagttgcgtaaattaccgacgacagg 26627993  T
Q  202 ctgaattcatcaagaatgcattcttcatgttcaattttatgggagagaatgttgtttaagaatgtggatagggagatt 279  Q
    ||||| |||||  ||||| ||||||||||||||| | |  | ||||||||||| ||||| || | |||||||||||||    
T  26627992 ctgaaatcatcgggaatggattcttcatgttcaactctgcgagagagaatgttatttaaaaaaggggatagggagatt 26627915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 102 - 279
Target Start/End: Complemental strand, 26734069 - 26733892
Alignment:
Q  102 gccagatgactacagattgtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgcgtaaattaccgactacagg 201  Q
    |||||||||||| |  | |||||||| ||||  ||| || |||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  26734069 gccagatgactaaatgtggtttcctgacaatgtacagtcaaagaacaaaaaaatacttagttttggttagagaaaagttgcgtaaattaccgacgacagg 26733970  T
Q  202 ctgaattcatcaagaatgcattcttcatgttcaattttatgggagagaatgttgtttaagaatgtggatagggagatt 279  Q
    ||||| |||||  ||||| ||||||||||||||| | |  | ||||||||||| ||||| || | |||||||||||||    
T  26733969 ctgaaatcatcgggaatggattcttcatgttcaactctgcgagagagaatgttatttaaaaaaggggatagggagatt 26733892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 97 - 242
Target Start/End: Original strand, 27702399 - 27702544
Alignment:
Q  97 aaatggccagatgactacagattgtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgcgtaaattaccgact 196  Q
    |||| ||||||||||||||  | |||||||| ||||  ||| || || ||||||||||||||||||||| ||||||||||||||||||||||||| |||     
T  27702399 aaatagccagatgactacatgtcgtttcctgacaatgtacagtcaaaaaacaagaaaatacttagttttggttagagaaaagttgcgtaaattacagaca 27702498  T
Q  197 acaggctgaattcatcaagaatgcattcttcatgttcaattttatg 242  Q
    |||||||||| |||||  ||||| ||||| ||||||||| ||||||    
T  27702499 acaggctgaaatcatcgggaatggattctccatgttcaactttatg 27702544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 27714166 - 27714259
Alignment:
Q  97 aaatggccagatgactacagattgtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgcgtaaatta 190  Q
    |||| ||||||||||||||  | |||||||| ||||  ||| || |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27714166 aaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaatta 27714259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 313 - 392
Target Start/End: Original strand, 27422666 - 27422746
Alignment:
Q  313 tttatttcaacatgagaggatccactcttgaaattgtaatacacaccattatgcagaaaac-aaaaattctaacatgttac 392  Q
    |||||||||||| ||||| |||||||||||||||||| ||||| ||||||||||||||||| ||||||||| |||||||||    
T  27422666 tttatttcaacaagagagaatccactcttgaaattgtcatacaaaccattatgcagaaaacaaaaaattctgacatgttac 27422746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 26629612 - 26629528
Alignment:
Q  294 gaaacataacttagtcatttttatttcaacatgagaggatccactcttgaaattgtaatacacaccattatgcagaaaacaaaaa 378  Q
    ||||||||||||  | || |||||| |||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||||||    
T  26629612 gaaacataacttccttatgtttattccaacatgagaggatccactcttgaaattgtcatataaaccattatgtagaaaacaaaaa 26629528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 26735588 - 26735504
Alignment:
Q  294 gaaacataacttagtcatttttatttcaacatgagaggatccactcttgaaattgtaatacacaccattatgcagaaaacaaaaa 378  Q
    ||||||||||||  | || |||||| |||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||||||    
T  26735588 gaaacataacttccttatgtttattccaacatgagaggatccactcttgaaattgtcatataaaccattatgtagaaaacaaaaa 26735504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 279
Target Start/End: Complemental strand, 26828446 - 26828269
Alignment:
Q  102 gccagatgactacagattgtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgcgtaaattaccgactacagg 201  Q
    ||||||| ||||||||| |  ||||| ||||  ||| || || ||||||||||| ||||||||| | ||||||||||||  ||||||||| ||| || ||    
T  26828446 gccagatcactacagatggactcctgacaatgtacagtcaaaaaacaagaaaatgcttagttttggatagagaaaagttctgtaaattactgacaactgg 26828347  T
Q  202 c-tgaattcatcaagaatgcattcttcatgttcaattttatgggagagaatgttgtttaagaatgtggatagggagatt 279  Q
    | |||| ||| |  ||||| ||| | |||||||||| ||||| ||||||||||| ||||| |||| |||||||||||||    
T  26828346 cttgaaatcaacgggaatggattttccatgttcaatgttatgagagagaatgtt-tttaaaaatggggatagggagatt 26828269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 96 - 260
Target Start/End: Complemental strand, 26890151 - 26889989
Alignment:
Q  96 aaaatggccagatgactacagattgtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgcgtaaattaccgac 195  Q
    ||||| ||||||||||||||||| |||||||| ||||  ||| || || || ||  ||||  |||||||| ||||||||||||||| | |||| ||| ||    
T  26890151 aaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgtgcaaataaccaac 26890052  T
Q  196 tacaggctgaattcatcaagaatgcattcttcatgttcaattttatgggagagaatgttgtttaa 260  Q
     ||||||||||||||||   | |  |||||||||||| ||||||||  |||||||||||| ||||    
T  26890051 aacaggctgaattcatcggcacttgattcttcatgtttaattttat--gagagaatgttgcttaa 26889989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 27422553 - 27422638
Alignment:
Q  97 aaatggccagatgactacagattgtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgc 182  Q
    |||| ||||||||||||||||| |||||||| ||||  |||  | ||||||||| |||| ||||||||| ||||||||||||||||    
T  27422553 aaatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagtaaatgcttagttttcgttagagaaaagttgc 27422638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 380
Target Start/End: Complemental strand, 26651082 - 26651015
Alignment:
Q  313 tttatttcaacatgagaggatccactcttgaaattgtaatacacaccattatgcagaaaacaaaaatt 380  Q
    |||||||||||| ||||||||||||| |||||||||| | ||| |||| |||||| ||| ||||||||    
T  26651082 tttatttcaacaagagaggatccacttttgaaattgtcaaacaaaccactatgcaaaaaccaaaaatt 26651015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 380
Target Start/End: Complemental strand, 26757050 - 26756983
Alignment:
Q  313 tttatttcaacatgagaggatccactcttgaaattgtaatacacaccattatgcagaaaacaaaaatt 380  Q
    |||||||||||| ||||||||||||| |||||||||| | ||| |||| |||||| ||| ||||||||    
T  26757050 tttatttcaacaagagaggatccacttttgaaattgtcaaacaaaccactatgcaaaaaccaaaaatt 26756983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 392
Target Start/End: Complemental strand, 26966092 - 26966021
Alignment:
Q  322 acatgagaggatccactcttgaaattgtaatacacaccattatgcagaaaacaaaaattc-taacatgttac 392  Q
    ||||||||  ||||||| |||||||||| ||||| || ||||||||||||||||||| || |||||||||||    
T  26966092 acatgagaaaatccacttttgaaattgtcatacaaacgattatgcagaaaacaaaaaatcataacatgttac 26966021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 390
Target Start/End: Complemental strand, 26964325 - 26964250
Alignment:
Q  313 tttatttcaacatgagaggatccactcttgaaattgtaatacacaccattatgcagaaaacaaaaattctaacatgtt 390  Q
    |||||||||||  ||||||||||||| ||||||||||  |||| |||| |||||| |||  |||||||||||||||||    
T  26964325 tttatttcaac--gagaggatccacttttgaaattgtcgtacaaaccactatgcaaaaacaaaaaattctaacatgtt 26964250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 26966189 - 26966104
Alignment:
Q  97 aaatggccagatgactacagattgtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgc 182  Q
    |||| ||||||||||||||||| || ||||| ||||  ||| || ||||||||| |||  ||||||||| ||| ||||||||||||    
T  26966189 aaatagccagatgactacagatggtgtcctgacaatgtacagtcaaagaacaagtaaaagcttagttttggtttgagaaaagttgc 26966104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 26631542 - 26631460
Alignment:
Q  100 tggccagatgactacagattgtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgc 182  Q
    ||||||||||||||||||| | ||||||  |||  ||| || |||| |||| |||| ||| ||||| ||||||||||||||||    
T  26631542 tggccagatgactacagatggcttcctgaaaatgtacattccaagagcaagtaaatgctttgttttggttagagaaaagttgc 26631460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 26737517 - 26737435
Alignment:
Q  100 tggccagatgactacagattgtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgc 182  Q
    ||||||||||||||||||| | ||||||  |||  ||| || |||| |||| |||| ||| ||||| ||||||||||||||||    
T  26737517 tggccagatgactacagatggcttcctgaaaatgtacattccaagagcaagtaaatgctttgttttggttagagaaaagttgc 26737435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 26853646 - 26853552
Alignment:
Q  157 cttagtttttgttagagaaaagttgcgtaaattaccgactacaggctgaattcatcaagaatgcattcttcatgttcaattttatgggagagaat 251  Q
    ||||||||| ||||||||||||||  ||||| ||||| | |||||||||| || |   ||||| ||||| ||| ||||| |||||| ||||||||    
T  26853646 cttagttttggttagagaaaagttatgtaaactaccgtcaacaggctgaaatcgttgggaatggattctccattttcaactttatgagagagaat 26853552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 228 - 384
Target Start/End: Original strand, 18692562 - 18692718
Alignment:
Q  228 atgttcaattttatgggagagaatgttgtttaagaatgtggatagggagattttatttagatattagaaacataacttagtcatttttatttcaacatga 327  Q
    ||||||||||||||| |||||| | ||||| || | ||  ||||||||||| | |  | ||||||||||||||||| |  |||| |||||||||||||||    
T  18692562 atgttcaattttatgcgagagatttttgttaaaaagtggagatagggagatataaggttgatattagaaacataacgtcctcatgtttatttcaacatga 18692661  T
Q  328 gaggatccactcttgaaattgtaatacacaccattatgcagaaaacaaaaattctaa 384  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  18692662 gaggatccactcttgaaattgtcatacacaccattatgcagaaaacaaacattctaa 18692718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 334
Target Start/End: Original strand, 18674491 - 18674597
Alignment:
Q  228 atgttcaattttatgggagagaatgttgtttaagaatgtggatagggagattttatttagatattagaaacataacttagtcatttttatttcaacatga 327  Q
    ||||||||||||||| |||||| ||||||| || | ||  ||||||||||| | |  | ||||||||||||||||| |  |||| |||||||||||||||    
T  18674491 atgttcaattttatgagagagattgttgttaaaaagtggagatagggagatataaggttgatattagaaacataacgtcctcatgtttatttcaacatga 18674590  T
Q  328 gaggatc 334  Q
    |||||||    
T  18674591 gaggatc 18674597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 323
Target Start/End: Original strand, 18719061 - 18719156
Alignment:
Q  228 atgttcaattttatgggagagaatgttgtttaagaatgtggatagggagattttatttagatattagaaacataacttagtcatttttatttcaac 323  Q
    ||||||||||||||| |||||| ||||||| || | || |||||||||||| | |  ||||||||||||||| ||| |  |||| |||||||||||    
T  18719061 atgttcaattttatgagagagattgttgttaaaaagtggggatagggagatataaggtagatattagaaacacaacgtcctcatgtttatttcaac 18719156  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 18692521 - 18692559
Alignment:
Q  157 cttagtttttgttagagaaaagttgcgtaaattaccgac 195  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  18692521 cttagttttggttagagaaaagttgtgtaaattaccgac 18692559  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 18719020 - 18719058
Alignment:
Q  157 cttagtttttgttagagaaaagttgcgtaaattaccgac 195  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  18719020 cttagttttggttagagaaaagttgtgtaaattaccgac 18719058  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 18719155 - 18719195
Alignment:
Q  336 actcttgaaattgtaatacacaccattatgcagaaaacaaa 376  Q
    |||||||||||| | ||||||||||| ||||||||||||||    
T  18719155 actcttgaaattttcatacacaccataatgcagaaaacaaa 18719195  T

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Target: scaffold0349 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 97 - 190
Target Start/End: Complemental strand, 17778 - 17685
Alignment:
Q  97 aaatggccagatgactacagattgtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgcgtaaatta 190  Q
    |||| ||||||||||||||  | |||||||| ||||  ||| || |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17778 aaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaatta 17685  T

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Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 29270059 - 29270152
Alignment:
Q  97 aaatggccagatgactacagattgtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgcgtaaatta 190  Q
    |||| ||||||||||||||  | |||||||| ||||  ||| || |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29270059 aaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaatta 29270152  T

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Target: scaffold0003 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 313 - 392
Target Start/End: Complemental strand, 64697 - 64617
Alignment:
Q  313 tttatttcaacatgagaggatccactcttgaaattgtaatacacaccattatgcagaaaaca-aaaattctaacatgttac 392  Q
    |||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||||||||| |||||||| |||||||||    
T  64697 tttatttcaacaagagagaatccactcttgaaattgtcatacaaaccattatgcagaaaacaaaaaattctgacatgttac 64617  T

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Target: scaffold0003; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 64810 - 64725
Alignment:
Q  97 aaatggccagatgactacagattgtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgc 182  Q
    |||| ||||||||||||||||| |||||||| ||||  |||  | ||||||||| |||| ||||||||| ||||||||||||||||    
T  64810 aaatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagtaaatgcttagttttcgttagagaaaagttgc 64725  T

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