View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_high_22 (Length: 408)
Name: NF12952_high_22
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 9475555 - 9475952
Alignment:
| Q |
1 |
ttgaactgtagcaagccagtgaaggacgatcctgattatgtggacacagctccgtgcagagtgaactgggactccaactccactgatcatgtttatgtga |
100 |
Q |
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| T |
9475555 |
ttgaactgtagcaagccagtgaaggacgatcctgattatgtggacacagctccgtgcagagtgaactgggactccaactccactgatcatgtttatgtga |
9475654 |
T |
|
| Q |
101 |
tcgctcggcgcataagtgctcgaaaattaaatattgattgccacgtgaagcttgttgctatgtcatcagctcctgcttttatctctcagagtgatctaca |
200 |
Q |
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| T |
9475655 |
tcgctcggcgcataagtgctcgaaaattaaatattgattgccacgtgaagcttgttgctatgtcagcagctcctgcttttatctctcggagtgatcaaca |
9475754 |
T |
|
| Q |
201 |
ccatttttcttacgcggaaattcacggaatgctaagctatggatttgaactttcgtggatgacacgtgcttgtgaagatttttgtgacttaaaacaacaa |
300 |
Q |
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| T |
9475755 |
ccatttttcttacgcggaaattcacggaatgctaagctatggatttgaaatttcgtggattacacgtgcttgtgaagatttttgtgacttaaaacgacaa |
9475854 |
T |
|
| Q |
301 |
gactgctacatgggtctaattacaaccggatctttgatatgtctaagtcgtgcttgcactgctccattcggatacaacatcttatgtggtaagtataa |
398 |
Q |
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| T |
9475855 |
gactgctccatggatcgaattaacaccggacctttgatatgtctaagtcgtgtttgcactgctccattcggatacaacatcttatgtggtaagtataa |
9475952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 9307326 - 9307382
Alignment:
| Q |
232 |
ctaagctatggatttgaactttcgtggatgacacgtgcttgtgaagatttttgtgac |
288 |
Q |
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| T |
9307326 |
ctaagctatggatttgaactttcgtggatgagacgtggttgtgaagatcattgtgac |
9307382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 124 - 312
Target Start/End: Complemental strand, 9168179 - 9167991
Alignment:
| Q |
124 |
aaattaaatattgattgccacgtgaagcttgttgctatgtcatcagctcctgcttttatctctcagagtgatctacaccatttttcttacgcggaaattc |
223 |
Q |
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||||| ||| ||| ||||| ||||||||||||| |||||||||||||| ||||||||||| ||| ||| | || | |||||| || | |||||||| |
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| T |
9168179 |
aaattgaatgttggttgccgcgtgaagcttgttactatgtcatcagctttagcttttatctccaagaaagattttcaacctttttcatatgtggaaattc |
9168080 |
T |
|
| Q |
224 |
acggaatgctaagctatggatttgaactttcgtggatgacacgtgcttgtgaagatttttgtgacttaaaacaacaagactgctacatg |
312 |
Q |
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| T |
9168079 |
atcgatttctaagctatggatttgaactttcgtggataagacaaccttgtgaagattcttgtgacatgaaccaacaaaactgctacatg |
9167991 |
T |
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