View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_high_24 (Length: 394)
Name: NF12952_high_24
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 46909943 - 46910320
Alignment:
| Q |
1 |
atccctagcaaatcatcagatgccagaatcaccacattcactccccttaccaaaagaacatggattgcaattctcagcaaattccttgcaccttctatgt |
100 |
Q |
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| T |
46909943 |
atccctagcaaatcatcagatgccagaatcaccacattcactccccttaccaaaagaacatggattgcaattctcagcaaattccttgcaccttctatgt |
46910042 |
T |
|
| Q |
101 |
cttttctctgcaaagcatccacagcaggaactagtatatgttcctcagtcgctttgtctagcaacactacttcaaaaccctgactttgaagcttttcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46910043 |
cttttctctgcaaagcatccacagcaggaactagtatatgttcctcagtcgctttgtctagcaacactacttcaaaaccctgactttgaagcttttcctt |
46910142 |
T |
|
| Q |
201 |
gtaataacaaactacaaaggatgaatctgtagtgagcagtccaatccgcacggtacttgtagcatgaatgggcttcatcttagcattcttgagttccatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46910143 |
gtaataacaaactacaaaggatgaatctgtagtgagcagtccaatccgcacggtacttgtagcatgaattggcttcatcttagcattcttgagttccatg |
46910242 |
T |
|
| Q |
301 |
gcaacacagtcaccaacatgaagaaaaggtagagaactatccttcgaaatttctttgtgccaagcatgtgacagatga |
378 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46910243 |
gcaacacagtcaccaacatgaagaaaaggtagagaactatccttcgaaatctctttgtgccaagcatgtgacagatga |
46910320 |
T |
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