View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_high_25 (Length: 368)
Name: NF12952_high_25
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 42902197 - 42902516
Alignment:
| Q |
1 |
attggattctttatgatagagaggattcttcacaatggtatgcatgtttagcttgaccttggtttagacttgttgtttgatttctgaggaccaaaagaag |
100 |
Q |
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| T |
42902197 |
attggattctttatgatagagaggattcttcacaatggtatgcatgtttagcttgaccttggtttagacttgttgtttgatttctgaggaccaaaagaag |
42902296 |
T |
|
| Q |
101 |
acaattagtgcttnnnnnnnn-tattaaaatgtgagattaattgtttttgttttagagaagagattaattgttatacatggaataagcagttttcatttt |
199 |
Q |
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| T |
42902297 |
acaattagtgcttaaaaaaaaatattaaaatgtgagattaattgtttttgttttagagaagagattaattgttatacatggaataagcagttttcatttt |
42902396 |
T |
|
| Q |
200 |
tccccacaacaattgatctatatgacaatttctcacatatttnnnnnnnnnnnggggggttaaagttgacgacgcatattgtaataattagatgatacaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42902397 |
tccccacaacaattgatctatatgacaatttctcacatatttaaaaaaaaaaaaaagggttaaagttgacgacgcatattgtaataattagatgatacaa |
42902496 |
T |
|
| Q |
300 |
ttagaaaaatataattgata |
319 |
Q |
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|||||||||||||||||||| |
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| T |
42902497 |
ttagaaaaatataattgata |
42902516 |
T |
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