View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_high_31 (Length: 276)
Name: NF12952_high_31
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 41667213 - 41667470
Alignment:
| Q |
12 |
atgaactaagatccaaagatttcatgaataacatgtttagaacacttgagcagatgaattaaaattctcatttgaatcaaaatttactacgcctatgatg |
111 |
Q |
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| T |
41667213 |
atgaactaagatccaaagatttcatgaataacatgtttagaacacttgagcagatgaagtaaaattctcatttgaatcaaaatttactacgcctatgatg |
41667312 |
T |
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| Q |
112 |
tttgtagctttctaaatgacatttcaccccaaaac---------acaatattattt--tnnnnnnnnngttcatatgtgtataaagtctagttcaactgg |
200 |
Q |
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| T |
41667313 |
tttgtagctttctaaatgacatttcaccccaaaacacaatattaacaatattatttaaaaaaaaaaaagttcatatgtgtataaagtctagttcaactgg |
41667412 |
T |
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| Q |
201 |
agatatcgagatggttaattataatgaatattttctatggttatccaaatttgaagat |
258 |
Q |
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| T |
41667413 |
agatatcgagatggttaattataatgaatattttctatggttatccaaatttgaagat |
41667470 |
T |
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