View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12952_high_34 (Length: 266)
Name: NF12952_high_34
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_high_34 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 2807360 - 2807616
Alignment:
| Q |
1 |
ggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacactttgattgccgtgcttgcatcgcagtttctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2807360 |
ggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacactttgattgtcgtgcttgcatcgcagtttctc |
2807459 |
T |
|
| Q |
101 |
aatcatacactgtgagagggttgatgataaacatgatggagcaattttgtcaggaaactgaagaccctcttccaaataagttacgcaaattggatgacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2807460 |
aatcatacactgtgagagggttgatgataaacatgatggagcaattttgtcaggaaactgaagaccctcttccaaataagttacgcaaattggatgacaa |
2807559 |
T |
|
| Q |
201 |
atcactgattgtagaagtgaggcaatacttgcaacataagaggtatttgatattctt |
257 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2807560 |
atcactgattgtagaagtgaggcaatacctgcaacataagaggtatttgatattctt |
2807616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 2838645 - 2838389
Alignment:
| Q |
1 |
ggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacactttgattgccgtgcttgcatcgcagtttctc |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || |||||||||| ||||||| || ||||||||| |
|
|
| T |
2838645 |
ggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggtaacagcaaactttgattgttatgcttgcgtcacagtttctc |
2838546 |
T |
|
| Q |
101 |
aatcatacactgtgagagggttgatgataaacatgatggagcaattttgtcaggaaactgaagaccctcttccaaataagttacgcaaattggatgacaa |
200 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||| | | ||| | |||| ||||||| | |
|
|
| T |
2838545 |
aatcatacactgtgagaggtttgttgataaacatgatggagcaattttgtcggggaactgaagaccctcttccacagatgttgcacaaaaaggatgacca |
2838446 |
T |
|
| Q |
201 |
atcactgattgtagaagtgaggcaatacttgcaacataagaggtatttgatattctt |
257 |
Q |
| |
|
|||||||||| |||||||||||||||| | |||||||||||||| ||||||||||| |
|
|
| T |
2838445 |
gtcactgattgaagaagtgaggcaatacctccaacataagaggtacttgatattctt |
2838389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 2855855 - 2855599
Alignment:
| Q |
1 |
ggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacactttgattgccgtgcttgcatcgcagtttctc |
100 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||||||||||| ||||||| ||||||| |||||||||| |||||||||| |||||||||||| ||||||||| |
|
|
| T |
2855855 |
ggaatggggggtataggaaaaactactcttgccaagctaatttttgacagccaaaaggtaacaacaaactttgattgtcgtgcttgcatcacagtttctc |
2855756 |
T |
|
| Q |
101 |
aatcatacactgtgagagggttgatgataaacatgatggagcaattttgtcaggaaactgaagaccctcttccaaataagttacgcaaattggatgacaa |
200 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||| | ||| | |||| |||||||| | |
|
|
| T |
2855755 |
aatcatacactgtgagaggtttgttgataaacatgatggagcaattttgtcggggaactgaagaccctcttccactgatgttgcacaaaatggatgacca |
2855656 |
T |
|
| Q |
201 |
atcactgattgtagaagtgaggcaatacttgcaacataagaggtatttgatattctt |
257 |
Q |
| |
|
||||||||| || |||| ||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
2855655 |
gtcactgattatacaagtaaggcaatacctgcaacataagaggtatttggtattctt |
2855599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 5412979 - 5413235
Alignment:
| Q |
1 |
ggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacactttgattgccgtgcttgcatcgcagtttctc |
100 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||| |||| || ||||||||||||| |||||||| | ||||||||| |
|
|
| T |
5412979 |
ggaatggggggcctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggtatcagcacactttgattgttgtgcttgcgtaacagtttctc |
5413078 |
T |
|
| Q |
101 |
aatcatacactgtgagagggttgatgataaacatgatggagcaattttgtcaggaaactgaagaccctcttccaaataagttacgcaaattggatgacaa |
200 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||||||| || |||||||||| ||||||| | | ||||| |||| |||||||| |
|
|
| T |
5413079 |
aatcatacactgtgagaggtttgttgataaacatgatggagcaattttgtcggggaactgaagactctcttccgcagatgttacacaaaatggatgaccg |
5413178 |
T |
|
| Q |
201 |
atcactgattgtagaagtgaggcaatacttgcaacataagaggtatttgatattctt |
257 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5413179 |
gtcactgattatagaagtgaggcaatacctgcaacataagaggtatttgatattctt |
5413235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 2759307 - 2759563
Alignment:
| Q |
1 |
ggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacactttgattgccgtgcttgcatcgcagtttctc |
100 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||| | |||||||||| |||||||| |
|
|
| T |
2759307 |
ggaatggggggtctcggcaaaaccactcttgccaagctagtttttgacagccaaaaggtaacaacacagtttgattgtcaagcttgcatcgtagtttctc |
2759406 |
T |
|
| Q |
101 |
aatcatacactgtgagagggttgatgataaacatgatggagcaattttgtcaggaaactgaagaccctcttccaaataagttacgcaaattggatgacaa |
200 |
Q |
| |
|
||||||||||||||||||| || ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||| |
|
|
| T |
2759407 |
aatcatacactgtgagaggattactgataaaaatgatggcgcaattttgtcaggaaactgaagaccctcttccaaagaagttacacaaaatggatgacag |
2759506 |
T |
|
| Q |
201 |
atcactgattgtagaagtgaggcaatacttgcaacataagaggtatttgatattctt |
257 |
Q |
| |
|
||||||||| ||| || ||| ||||| | ||||||||||||||||||||||||| |
|
|
| T |
2759507 |
gtcactgattacagaggtaaggaaatacctagaacataagaggtatttgatattctt |
2759563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 2769162 - 2769418
Alignment:
| Q |
1 |
ggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacactttgattgccgtgcttgcatcgcagtttctc |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||| |||||| || |||||||||| |||||||||||| ||||||||| |
|
|
| T |
2769162 |
ggaatggggggtctaggaaaaaccactcttgccaaactagtttatgacagccaaaaggtaactgcaaactttgattgtcgtgcttgcatcacagtttctc |
2769261 |
T |
|
| Q |
101 |
aatcatacactgtgagagggttgatgataaacatgatggagcaattttgtcaggaaactgaagaccctcttccaaataagttacgcaaattggatgacaa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| | ||| | ||||| |||| ||||||||| |
|
|
| T |
2769262 |
aatcatacactgtgagagggttactgataaaaatgatggagcaattttgtcaggaaactgaagaacctctgctaaagatgttacacaaaatggatgacat |
2769361 |
T |
|
| Q |
201 |
atcactgattgtagaagtgaggcaatacttgcaacataagaggtatttgatattctt |
257 |
Q |
| |
|
|||||| | |||| || ||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
2769362 |
gtcactggtaatagaggtaaggaaatacctacaacataagaggtatttgatattctt |
2769418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 2749088 - 2749344
Alignment:
| Q |
1 |
ggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacactttgattgccgtgcttgcatcgcagtttctc |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| |||| || ||||||||||||| ||||||||| || ||||||||| |
|
|
| T |
2749088 |
ggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaaaaaggtatcagcacactttgattgtcgtgcttgcgtcacagtttctc |
2749187 |
T |
|
| Q |
101 |
aatcatacactgtgagagggttgatgataaacatgatggagcaattttgtcaggaaactgaagaccctcttccaaataagttacgcaaattggatgacaa |
200 |
Q |
| |
|
|||| |||||||||||||| ||| |||||||||||||||||||||| |||| | ||| ||||| |||||| | | ||||| |||| |||||||| | |
|
|
| T |
2749188 |
aatcttacactgtgagaggtttgttgataaacatgatggagcaattctgtcggagtactaaagactctcttctgcagatgttacacaaaatggatgacca |
2749287 |
T |
|
| Q |
201 |
atcactgattgtagaagtgaggcaatacttgcaacataagaggtatttgatattctt |
257 |
Q |
| |
|
||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2749288 |
gtcactaattatagaagtgaggcaatacctgcaacataagaggtatttgatattctt |
2749344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 2818650 - 2818906
Alignment:
| Q |
1 |
ggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacactttgattgccgtgcttgcatcgcagtttctc |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||| || |||||||||| |||||||| |
|
|
| T |
2818650 |
ggaatggggggtctaggaaaaaccactcttgccaagctagtttttgacagccaaaaggtaacaacacagtttgattgtcgagcttgcatcgtagtttctc |
2818749 |
T |
|
| Q |
101 |
aatcatacactgtgagagggttgatgataaacatgatggagcaattttgtcaggaaactgaagaccctcttccaaataagttacgcaaattggatgacaa |
200 |
Q |
| |
|
||||||||||||||||||| || ||||||| |||||||||||||||| ||||||| ||||||||||| || | | | ||||||||| ||||||||| |
|
|
| T |
2818750 |
aatcatacactgtgagaggattactgataaaaatgatggagcaattttatcaggaagctgaagaccctgatctagagattttacgcaaaatggatgacag |
2818849 |
T |
|
| Q |
201 |
atcactgattgtagaagtgaggcaatacttgcaacataagaggtatttgatattctt |
257 |
Q |
| |
|
| ||||||| |||| || ||| ||||| | |||||||||||||||| |||||||| |
|
|
| T |
2818850 |
gttactgattatagaggtaaggaaatacctagaacataagaggtatttaatattctt |
2818906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 2797454 - 2797710
Alignment:
| Q |
1 |
ggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacactttgattgccgtgcttgcatcgcagtttctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || || |||| |||||||||| | |||||||| |||||||||||| ||||||||| |
|
|
| T |
2797454 |
ggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacagtcaaaaggtaacaacaaaatttgattgtcgtgcttgcatcacagtttctc |
2797553 |
T |
|
| Q |
101 |
aatcatacactgtgagagggttgatgataaacatgatggagcaattttgtcaggaaactgaagaccctcttccaaataagttacgcaaattggatgacaa |
200 |
Q |
| |
|
|||||||||| ||||| ||| | |||| |||||||||||| |||||||| ||||||||| ||||||| | | ||||| |||| |||||||||| |
|
|
| T |
2797554 |
aatcatacaccgtgagggggatattgatcaacatgatggaggaattttgtagcgaaactgaaagccctcttttgcagatgttacacaaaatggatgacaa |
2797653 |
T |
|
| Q |
201 |
atcactgattgtagaagtgaggcaatacttgcaacataagaggtatttgatattctt |
257 |
Q |
| |
|
||| ||||| || |||||||||||||| |||||||||| | ||||||||||||||| |
|
|
| T |
2797654 |
gtcattgattatacaagtgaggcaatacctgcaacataaaaagtatttgatattctt |
2797710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 79 - 260
Target Start/End: Original strand, 2790491 - 2790672
Alignment:
| Q |
79 |
cgtgcttgcatcgcagtttctcaatcatacactgtgagagggttgatgataaacatgatggagcaattttgtcaggaaactgaagaccctcttccaaata |
178 |
Q |
| |
|
|||||||||||| | ||||||||||||| ||| ||||| ||| | |||| |||||||||||| |||||||| |||||||||| ||||||| | | |
|
|
| T |
2790491 |
cgtgcttgcatcaccgtttctcaatcattcaccgtgagggggatattgatcaacatgatggaggaattttgtagcgaaactgaaggccctcttttgcaga |
2790590 |
T |
|
| Q |
179 |
agttacgcaaattggatgacaaatcactgattgtagaagtgaggcaatacttgcaacataagaggtatttgatattcttcga |
260 |
Q |
| |
|
||||| |||| |||||||||| ||||| ||| || |||||||||||||| || ||||||| | |||||||||||||||||| |
|
|
| T |
2790591 |
tgttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataaaaagtatttgatattcttcga |
2790672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 2790460 - 2790491
Alignment:
| Q |
1 |
ggaatgggaggtctaggaaaaaccactcttgc |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2790460 |
ggaatgggaggtctaggaaaaaccactcttgc |
2790491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 6197 - 5941
Alignment:
| Q |
1 |
ggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacactttgattgccgtgcttgcatcgcagtttctc |
100 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
6197 |
ggaatgggaggtatagggaaaaccactcttgccaagctagtttttgacagccaaaaggtaacaacacaatttgattgtcgtgcttgcatcgcagtttctc |
6098 |
T |
|
| Q |
101 |
aatcatacactgtgagagggttgatgataaacatgatggagcaattttgtcaggaaactgaagaccctcttccaaataagttacgcaaattggatgacaa |
200 |
Q |
| |
|
|| ||||||| ||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||| | | ||||| |||| |||||||||| |
|
|
| T |
6097 |
aaacatacaccgtgagagggttactcataaacatgatggagcaattttgtcgggaaactgaagaccctcttccgcaaatgttacacaaaatggatgacaa |
5998 |
T |
|
| Q |
201 |
atcactgattgtagaagtgaggcaatacttgcaacataagaggtatttgatattctt |
257 |
Q |
| |
|
||| | ||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5997 |
gtcattaattatagaagtgaggcaatacctgcaacataagaggtatttgatattctt |
5941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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