View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_high_35 (Length: 264)
Name: NF12952_high_35
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_high_35 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 31291155 - 31290925
Alignment:
| Q |
16 |
ataagaaaataaagtgatgaaaaagatttataagtcatattaattctttgaagagaaatggggaaccaatttgtaagaatctaaaaacaaattaatggaa |
115 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| || |
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| T |
31291155 |
ataagaaaataaagtgatgaaaaagatttacaagtcatattaattctttgaagagaaatggggaaccaatttgtaaaaatttaaaaacaacttaatgcaa |
31291056 |
T |
|
| Q |
116 |
gaaaaaaggactttctttctattaagttatagcaattcaattctcttcttgatgtataatatccactcattacaaccttaacgtaatacatggcagtaca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31291055 |
gaaaaaaggactttctttctattaagttatagcaattcaattctcttcttgatgtataatatccactcattacaaccttaacgtaatacatggaagtaca |
31290956 |
T |
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| Q |
216 |
aaaccaaaactttgagttatgaaacgaaatt |
246 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
31290955 |
aaaccaaaactttgagttatgaaacgaaatt |
31290925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 27506686 - 27506798
Alignment:
| Q |
128 |
ttctttctattaagttatagcaattcaattctcttcttgatgtataatatccactcattacaaccttaacgtaatacatggcagtacaaaaccaaaactt |
227 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||| ||| |||||||| ||||||||| |||| ||| |||||||||||||||||| |
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| T |
27506686 |
ttctttctattaagttatagcgattcatttctcttcttgatgtata--atcgactcattataaccttaacctaatgtttggaagtacaaaaccaaaactt |
27506783 |
T |
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| Q |
228 |
tgagttatgaaacga |
242 |
Q |
| |
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|||| |||||||||| |
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| T |
27506784 |
tgagctatgaaacga |
27506798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 230
Target Start/End: Original strand, 27606973 - 27607083
Alignment:
| Q |
118 |
aaaaaggactttctttctattaagttatagcaattcaattctcttcttgatgtataatatccactcattacaaccttaacgtaatacatggcagtacaaa |
217 |
Q |
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||||| ||||||||||||| |||||||||||| |||| |||||||||||||||||| ||||||||||||||||| ||||||||| ||| | || ||| |
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| T |
27606973 |
aaaaatgactttctttctaataagttatagcatttcatttctcttcttgatgtata--atccactcattacaaccataacgtaatgattggaaataaaaa |
27607070 |
T |
|
| Q |
218 |
accaaaactttga |
230 |
Q |
| |
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||||||||||||| |
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| T |
27607071 |
accaaaactttga |
27607083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 25079493 - 25079437
Alignment:
| Q |
115 |
agaaaaaaggactttctttctattaagttatagcaattcaattctcttcttgatgta |
171 |
Q |
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||||||||||| |||||||||||||||||||| || ||||||| | ||||||||||| |
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| T |
25079493 |
agaaaaaaggaatttctttctattaagttataacatttcaatttttttcttgatgta |
25079437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 246
Target Start/End: Original strand, 18719244 - 18719345
Alignment:
| Q |
141 |
gttatagcaattcaattctcttcttgatgtataatatccactcattacaaccttaacgtaatacatggcagtacaaaaccaaaactttgagttatgaaac |
240 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |||||||||| ||||||||||| ||| ||| |||||||||||||||| ||| ||||||||| |
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| T |
18719244 |
gttatagcaattcagttctcttcttgatgtata--atccactcatgacaaccttaacacaatcattggaagtacaaaaccaaaac--tgacttatgaaac |
18719339 |
T |
|
| Q |
241 |
gaaatt |
246 |
Q |
| |
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|||||| |
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|
| T |
18719340 |
gaaatt |
18719345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 246
Target Start/End: Original strand, 18674649 - 18674742
Alignment:
| Q |
149 |
aattcaattctcttcttgatgtataatatccactcattacaaccttaacgtaatacatggcagtacaaaaccaaaactttgagttatgaaacgaaatt |
246 |
Q |
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|||||| ||||||||| |||||||||| |||||||| ||||||||||||||| | ||| |||||||||||||||| ||| |||||||| |||||| |
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| T |
18674649 |
aattcagttctcttctggatgtataat--ccactcatgccaaccttaacgtaatgcttggaagtacaaaaccaaaac--tgatttatgaaatgaaatt |
18674742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 246
Target Start/End: Original strand, 18692730 - 18692823
Alignment:
| Q |
149 |
aattcaattctcttcttgatgtataatatccactcattacaaccttaacgtaatacatggcagtacaaaaccaaaactttgagttatgaaacgaaatt |
246 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| ||||||||||||||| | | | |||||||||||||||| ||| |||||||| |||||| |
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| T |
18692730 |
aattcagttctcttcttgatgtataat--ccactcatgccaaccttaacgtaatgcttagaagtacaaaaccaaaac--tgatttatgaaatgaaatt |
18692823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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