View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_high_40 (Length: 222)
Name: NF12952_high_40
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 27365469 - 27365587
Alignment:
| Q |
48 |
caaattaatggggtgaagatattcacaaaataaaaaa-caaagaggaggatgaaca-agagtgtgagagaggtggaaattagcgagcgtgtaaatgatag |
145 |
Q |
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| T |
27365469 |
caaatgaatggggtgaagatattcacaaaataaaaaaactaagaggaggatgaacagagagtgtgagagaggtggaaattagcgagcgtgtaaatgatag |
27365568 |
T |
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| Q |
146 |
cataggaacatgtagattt |
164 |
Q |
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| T |
27365569 |
cataggaacatgtagattt |
27365587 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 40858606 - 40858638
Alignment:
| Q |
171 |
tttgtatgggatgaaaacatgtccaatgcacag |
203 |
Q |
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| T |
40858606 |
tttgtatgggatgaaaacatgtcctatgcacag |
40858638 |
T |
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