View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_high_43 (Length: 210)
Name: NF12952_high_43
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 45991714 - 45991890
Alignment:
| Q |
17 |
cagagatttcagcttcatcaacaccaacaatcacaacaacaacaaatatctaattaaattttcttcttggattcaaaggcatgagtttgaatgtttatgt |
116 |
Q |
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| T |
45991714 |
cagagatttcaacttcatcaacaccaacaatcacaacaacaaaaaatatctaattaaattttcttcttggattcaaaggcatgagtttgaatgtttatgt |
45991813 |
T |
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| Q |
117 |
ttgatgataatttcttggagagaatatacggcggagaaggcgaagtggctgaagaattggtggttaaggattaggct |
193 |
Q |
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| T |
45991814 |
ttgatgataatttcttggagaaaatatacggcggagaagacgaagtggctgaagaattggtggttgaggattaggct |
45991890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 46151632 - 46151810
Alignment:
| Q |
17 |
cagagatttcagcttcatcaacaccaacaatcacaacaacaacaaatatctaattaaattttcttcttggattcaaaggc--atgagtttgaatgtttat |
114 |
Q |
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| T |
46151632 |
cagagatttcagcttcatcaacaccaacaatcacaacaacaacaaatatctaattaaattttcttcttggattcaaaggcatatgagtttgaatgtttat |
46151731 |
T |
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| Q |
115 |
gtttgatgataatttcttggagagaatatacggcggagaaggcgaagtggctgaagaattggtggttaaggattaggct |
193 |
Q |
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| T |
46151732 |
gtgtgatgataatttcttggagagaatatacggtggagaagacgaagtggctgaagaattggtggttgaggattaggct |
46151810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 3871747 - 3871843
Alignment:
| Q |
45 |
aatcacaacaacaacaaatatctaattaaattttcttcttggattcaaaggcatgagtttgaatgtttatgtttgatgataatttcttggagagaata |
142 |
Q |
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| T |
3871747 |
aatcacaacaacaacaaatc-ctaattaaaatttcttcttggattgaaaggcttgagtttgaatgttcatgtgtgatgataatttatgggagggaata |
3871843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 19802334 - 19802388
Alignment:
| Q |
30 |
ttcatcaacaccaacaatcacaacaacaacaaatatctaattaaattttcttctt |
84 |
Q |
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| T |
19802334 |
ttcatcaccaccaacaatctcaacaacaacaaatttctaatttaattttcttctt |
19802388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 37464571 - 37464522
Alignment:
| Q |
29 |
cttcatcaacaccaacaatcacaacaacaacaaatatctaattaaatttt |
78 |
Q |
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| T |
37464571 |
cttcatcaccaccaacaatatcaacaacaacaaatttctaattaaatttt |
37464522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 5225094 - 5225030
Alignment:
| Q |
20 |
agatttcagcttcatcaacaccaacaatcacaacaacaacaaatatctaattaaattttcttctt |
84 |
Q |
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|||||| | |||||||||||||||||||| |||| || ||||| |||||||||||||||||||| |
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| T |
5225094 |
agatttaaacttcatcaacaccaacaatctaaacagcatcaaatttctaattaaattttcttctt |
5225030 |
T |
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