View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_high_6 (Length: 679)
Name: NF12952_high_6
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 2e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 287 - 460
Target Start/End: Original strand, 28547683 - 28547856
Alignment:
| Q |
287 |
cgtgtctaacaaacaatggtgactcattataatatttggtcaattaatattacttttaacaaaagctagcttataataatcataagcagaaagcagaaga |
386 |
Q |
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| T |
28547683 |
cgtgtctaacaaacaatggtgactcattataatatttggtcaattaatatgacttttaacaaaagctagcttataataatcataagcagaaagcagaaga |
28547782 |
T |
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| Q |
387 |
agatgaaaatagaggtacccaaaaggagtatatgcagccattgagttaaagtttgaaactttattatatatggt |
460 |
Q |
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| T |
28547783 |
agatgaaaatagaggtacccaaaaggagtatatgtagccattgagttaaagtttgaaactttattatatatggt |
28547856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 28547404 - 28547599
Alignment:
| Q |
11 |
cacagacagcagccattgagcttctttgctttgagtagccaagaaaccaaaagaaaaagaaatttccattcaaccccacttgttgaatatcacaaaatca |
110 |
Q |
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| T |
28547404 |
cacagacagcagccattgagcttctttgctttgagtagccaagaaaccaaaagaaaaagaaatttccattcaaccccacttgttgaatatcacaaaatca |
28547503 |
T |
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| Q |
111 |
aatcaaactgcatcaaaaccataaacttataacataagagccataaaaattcccc-cnnnnnnngtcttttttaaagcatagaataattgagggtg |
205 |
Q |
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| T |
28547504 |
aatcagactgcatcaaaaccataaacttataacataagagccataaaaattccccaaaaaaaaagtcttttttaaagcatagaataattgagggtg |
28547599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 528 - 661
Target Start/End: Original strand, 28547924 - 28548057
Alignment:
| Q |
528 |
ctgacctgagcagaaaatgaggcgaaagagaccacaggaaaagagtgtgttaatagatttgaattaaatacacttcgtattgaatttcaatgcaacaatt |
627 |
Q |
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| T |
28547924 |
ctgacctgagcggaaaatgaggcgaaatagacaacaggaaaagagtctgttaatagatttgaattaaatacacttcgtattgaatttcaatgcaacaatt |
28548023 |
T |
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| Q |
628 |
aagtctcaccatgtataatgaatgattgatactt |
661 |
Q |
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| T |
28548024 |
aagtctcaccatgtataatgaatgattgatactt |
28548057 |
T |
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