View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12952_high_8 (Length: 672)

Name: NF12952_high_8
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12952_high_8
NF12952_high_8
[»] chr3 (1 HSPs)
chr3 (19-664)||(49698446-49699091)


Alignment Details
Target: chr3 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 19 - 664
Target Start/End: Complemental strand, 49699091 - 49698446
Alignment:
Q  19 attcacaacattatcagtaattgaaagaggtctcaaaggttcattcaagaacccgaattcaaatggtgacacccatgcagtgtagaacactaacaccacc 118  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49699091 attcacaacattatcagtaatcgaaagaggtctcaaaggttcattcaagaacccgaattcaaatggtgacacccatgcagtgtagaacactaacaccacc 49698992  T
Q  119 aaaaacatctgccaccatctgcatgccnnnnnnnncaagaaattaacttactaattaagaacaaaatgattagtttatacggtttcacgcagatataaga 218  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49698991 aaaaacatctgccaccatctgcatgccaaaaaaa-caagaaattaacttactaattaagaacaaaatgattagtttatacggtttcacgcagatataaga 49698893  T
Q  219 attatataacaaaaattaataac-aagcatacctgtagcgacggtcattgggggagatggttcttcgacggagtttggttcttttggctccgaaatcgcc 317  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49698892 attatataacaaaaattaataacgaagcatacctgtagcgacggtcattgggggagatggttcttcgacggagtttggttcttttggctccgaaatcgcc 49698793  T
Q  318 tagaggcggaagtggagctccgccggtgaggctgtacatgctgccatcatcgtgttccgggagaattccatctccattatgattttccatcatgttcata 417  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49698792 tagaggcggaagtggagctccgccagtgaggctgtacatgctgccatcatcgtgttccgggagaattccatctccattatgattttccatcatgttcata 49698693  T
Q  418 tttctctcatgatctaaggcatcatcatcgttgtggctttcatacatcatttttgcacaccgtagagattagtaacaatgtttcaatgaaatttcttaat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49698692 tttctctcatgatctaaggcatcatcatcgttgtggctttcatacatcatttttgcacaccgtagagattagtaacaatgtttcaatgaaatttcttaat 49698593  T
Q  518 gtcacgattgtacgtctacggtttttatgaagctagctaactttgttcaatcattatatgattaatcaccatgcaacactagcttctttattaattctct 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  49698592 gtcacgattgtacgtctacggtttttatgaagctagctaactttgttcaatcattatatgattaatcaccatgcaacaccagcttctttattaattctct 49698493  T
Q  618 ggagatggaatttgtgtggtattgtatggtgttaattgcttcttctc 664  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  49698492 ggagatggaatttgtgtggtattgtatggtgttaattgcttcttctc 49698446  T

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