View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_high_9 (Length: 666)
Name: NF12952_high_9
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 7 - 371
Target Start/End: Complemental strand, 53939878 - 53939513
Alignment:
| Q |
7 |
gtgagaagaagtagaagaggggg-tgggggtgtacaattggaacagatggagattcgtgagccgttgcttgcttgcttacttcttcaagtggagaagaat |
105 |
Q |
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| T |
53939878 |
gtgagaagaagtagaagaggggggtgggggtgtacaattggaacagatggagattcgtgcgccgttgcttgcttgcttacttcttcaagtggagaagaat |
53939779 |
T |
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| Q |
106 |
atcctttactaggacttcactttactctgtttcttctttgtactcttctaccattgaaaaggacgattacgattaataattcacacgacaatgatcaaat |
205 |
Q |
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| T |
53939778 |
atcctttactagtacttcactttactctgtttcttctttgtactcttctaccattgaaaaggacgattacgattaataattcacacgacaatgatcaaat |
53939679 |
T |
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| Q |
206 |
caaataatagcttcttaaaccctccattccattcttcaacactcatggacgacactgcttcaacctgaaccttccttcatctcagatggtttcctctttc |
305 |
Q |
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| T |
53939678 |
caaataatagcttcttaaaccctccattccattcttcaacactcatgaacgacactgcttcaacctgaaccttccttcatctcagatggtttcctctttc |
53939579 |
T |
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| Q |
306 |
gcttttaatcctctcatttcttcctccttcaacattgcttctaccactaaccacgtaatatttcag |
371 |
Q |
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| T |
53939578 |
gcttttaatcctctcatttcttcctccttcaacattgcttccaccactcaccacgtaatatttcag |
53939513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 411 - 650
Target Start/End: Complemental strand, 53939479 - 53939240
Alignment:
| Q |
411 |
ttataagaggttccgagcttaattttacttgccacaaacacgtagagtacaactcaaacaaacatttgtgcttataatttggatctgtatagttacttac |
510 |
Q |
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| T |
53939479 |
ttataagaggttccgagcttaattttacttgccacaaacacgtagagtaaaactcaaacaaacatttgtgcttataatttggatctgtatagttacttac |
53939380 |
T |
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| Q |
511 |
tttcattcctttcttttggcagacctcaacaaataagcagcatcttgtcacgcaaaagccggtacaactggcacttgtctatcagaatccaaataatgga |
610 |
Q |
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| T |
53939379 |
tttcattcctttcttttggcagacctcaacaaataagcagcatcttgtcacgcaaaagccggtacaactggcacttgtctatcagaatccaaataatgga |
53939280 |
T |
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| Q |
611 |
tgtaaggttttccattttggatcaatatatcagaaggtat |
650 |
Q |
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| T |
53939279 |
tgtaaggtgttccattttggatcaatatatcagaaggtat |
53939240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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