View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12952_low_11 (Length: 634)
Name: NF12952_low_11
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_low_11 |
 | |
|
| [»] scaffold0009 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 31 - 439
Target Start/End: Original strand, 22990246 - 22990656
Alignment:
| Q |
31 |
taagctaggaagtactatgaattaagaagtaatctaagctaggat--gta-ctatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgt |
127 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| | || || ||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22990246 |
taagataggatgtactatgaattaagaagtaatctagga-agtattagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgt |
22990344 |
T |
|
| Q |
128 |
ctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactat |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22990345 |
ctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactat |
22990444 |
T |
|
| Q |
228 |
gaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttcactta |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22990445 |
gaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaatgaaagcttatgttgtgtgataattatgctcgtatttttggttcactta |
22990544 |
T |
|
| Q |
328 |
tgttgnnnnnnngcttcggatttgttgttctcttatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatga |
427 |
Q |
| |
|
| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22990545 |
ttttgtttttttgcttcggatttgttgttcacttatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatga |
22990644 |
T |
|
| Q |
428 |
tttcttatgttt |
439 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22990645 |
tttcttatgttt |
22990656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 31 - 439
Target Start/End: Complemental strand, 22714979 - 22714569
Alignment:
| Q |
31 |
taagctaggaagtactatgaattaagaagtaatctaagctaggat--gta-ctatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgt |
127 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| | || || ||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22714979 |
taagataggatgtactatgaattaagaagtaatctagga-agtattagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgt |
22714881 |
T |
|
| Q |
128 |
ctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactat |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22714880 |
ctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaaaaagtgctagtaactat |
22714781 |
T |
|
| Q |
228 |
gaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttcactta |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22714780 |
gaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaatgaaagcttatgttgtgtgataattatgctcgtatttttggttcactta |
22714681 |
T |
|
| Q |
328 |
tgttgnnnnnnngcttcggatttgttgttctcttatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatga |
427 |
Q |
| |
|
| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22714680 |
ttttgtttttttgcttcggatttgttgttcacttatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatga |
22714581 |
T |
|
| Q |
428 |
tttcttatgttt |
439 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22714580 |
tttcttatgttt |
22714569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 31 - 439
Target Start/End: Complemental strand, 28949236 - 28948826
Alignment:
| Q |
31 |
taagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtc |
128 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| | || | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28949236 |
taagctaggatgtactatgaattaagaagtaatctaggaagtaatagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgtc |
28949137 |
T |
|
| Q |
129 |
tttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactatg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28949136 |
tttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaaaaagtgctagtaactatg |
28949037 |
T |
|
| Q |
229 |
aagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttat |
328 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28949036 |
aagtactcttatgaagtacaaataacttatgtaatgtttctatcccttaatgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttat |
28948937 |
T |
|
| Q |
329 |
gttgnnnnnnngcttcggatttgttgttctcttatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatgat |
428 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28948936 |
gttgtttttttgcttcggatttgttgttcacttatcctccttaaactctatatttcagttttaactagttatatataagctatatttgtaatgccatgat |
28948837 |
T |
|
| Q |
429 |
ttcttatgttt |
439 |
Q |
| |
|
||||||||||| |
|
|
| T |
28948836 |
ttcttatgttt |
28948826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 26 - 332
Target Start/End: Original strand, 22696864 - 22697172
Alignment:
| Q |
26 |
ggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccg |
123 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||| | || | ||||||||||| | || |||||||||||||||||||||||| || | |
|
|
| T |
22696864 |
ggaattaacctaggaagtactatgaattaagaagtaatctacgaagtactagtaactatgaagtactattttgtttagtctttaatgttgtaatgctctg |
22696963 |
T |
|
| Q |
124 |
ttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22696964 |
ttgtctttaaattaagaagtaatctaggaagtaccggtaactttgaagtactgttatgtttttcctttcaattaggaagtaatctaagaagtggtagtaa |
22697063 |
T |
|
| Q |
224 |
ctatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttca |
323 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22697064 |
ctatgaagtactcttatgaagtactagtaacttatgtaatgtttctatcccttaatgaagacttatgttgtgtgataattatgctcgtatttatggttca |
22697163 |
T |
|
| Q |
324 |
cttatgttg |
332 |
Q |
| |
|
||||||||| |
|
|
| T |
22697164 |
cttatgttg |
22697172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 332
Target Start/End: Original strand, 46956533 - 46956859
Alignment:
| Q |
11 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtt---tagtctt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | || | ||||||||| | |||||| || ||||||| |
|
|
| T |
46956533 |
gaacctgtgtgactaggaagtaagctagaaagtactatgaattaagaagtaatctaggaagtactagtaactatgaagcactgttatattatttagtctt |
46956632 |
T |
|
| Q |
106 |
taatgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaa |
205 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46956633 |
taatgttgtaatgttccattatctttaaattaagaagtaatctaggaagtactagtaactatcaagtactgttatgttttgccttttaattaggaagtaa |
46956732 |
T |
|
| Q |
206 |
tctaagaagtgctagtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| |
|
|
| T |
46956733 |
tctaagaagtgctagtaactatgaagtactattatgaagtactagtaacttatgtaatgtttctataccttaatgaaggcttatgttgtgtgataattat |
46956832 |
T |
|
| Q |
306 |
gctcgtatttttggttcacttatgttg |
332 |
Q |
| |
|
||| |||||||| |||||||||||||| |
|
|
| T |
46956833 |
gcttgtattttttgttcacttatgttg |
46956859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 28949290 - 28949216
Alignment:
| Q |
11 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagctaggatgtactatgaa |
85 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
28949290 |
gaacctatgtgactaggaagtaagctaggaagtactatgagttaagaagcaatctaagctaggatgtactatgaa |
28949216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 22715033 - 22714959
Alignment:
| Q |
11 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagctaggatgtactatgaa |
85 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22715033 |
gaacctctgtgattaggaagtaagttaggaagtactatgaattaagaagtaatctaagataggatgtactatgaa |
22714959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 22990192 - 22990266
Alignment:
| Q |
11 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagctaggatgtactatgaa |
85 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22990192 |
gaacctctgtgattaggaagtaagttaggaagtactatgaattaagaagtaatctaagataggatgtactatgaa |
22990266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 31 - 439
Target Start/End: Complemental strand, 200862 - 200442
Alignment:
| Q |
31 |
taagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtc |
128 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| | || | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
200862 |
taagctaggatgtactatgaattaagaagtaatctaggaagtaatagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgtc |
200763 |
T |
|
| Q |
129 |
tttaaattaagaagtaatctaggaagtacctgtaactatgaagtact----------gttatgttttgcctttcaattaggaagtaatctaagaagtgct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
200762 |
tttaaattaagaagtaatctaggaagtacctgtaactatgaagtactatgaagtactgttatgtttttcctttcaattaggaattaatctaagaagtgct |
200663 |
T |
|
| Q |
219 |
agtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
200662 |
agtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaatgaaagcttatgttgtgtgataattatgctcgtatttttg |
200563 |
T |
|
| Q |
319 |
gttcacttatgttgnnnnnnngcttcggatttgttgttctcttatcctccataaactctatatttcagttttaactagttatatataagctatatttgca |
418 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
200562 |
gttcacttattttgtttttttgcttcggatttgttgttcacttatcctccataaactatatatttcagttttaactagttatatataagctatatttgca |
200463 |
T |
|
| Q |
419 |
atgccatgatttcttatgttt |
439 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
200462 |
atgccatgatttcttatgttt |
200442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 200916 - 200842
Alignment:
| Q |
11 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagctaggatgtactatgaa |
85 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
200916 |
gaacctctgtgattaggaagtaagctaggaagtactatgaattaagaagtaatctaagctaggatgtactatgaa |
200842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 240; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 11 - 415
Target Start/End: Original strand, 20087585 - 20087992
Alignment:
| Q |
11 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaa |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | || | ||||||||||| |||||| |||||||||||| |
|
|
| T |
20087585 |
gaacttgtgtgactaggaagtaagctaggaagtcttatgaattaagaagtaatctaggaagtactagtaactatgaagtactgttatatttagtctttaa |
20087684 |
T |
|
| Q |
109 |
tgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatct |
208 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20087685 |
tgttgtaatgttccgttatctttaaattaagaagtaatctagaaagtactagtaactatgaagtactgttatgttttgccttttaattaggaagtaatct |
20087784 |
T |
|
| Q |
209 |
aagaagtgctagtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgct |
308 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
20087785 |
aagaagtactagtaactatgaagtactattatgaagtactagtaacttatgtaatgtttctatcccttaatgaagacttatgttgtgtgataattatgct |
20087884 |
T |
|
| Q |
309 |
cgtatttttggttcacttatgttg-nnnnnnngcttcggatttgttgttctcttatcctccataaactctatatttcagttttaactagttatatataag |
407 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||| | | |||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
20087885 |
tgtatttttggttcacttatgttgttttttttccttcagatttgttgttcacctgtcctccataagctctatatttcagttttaactggttatatataag |
20087984 |
T |
|
| Q |
408 |
ctatattt |
415 |
Q |
| |
|
|| ||||| |
|
|
| T |
20087985 |
ctctattt |
20087992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 26 - 332
Target Start/End: Original strand, 19646298 - 19646606
Alignment:
| Q |
26 |
ggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccg |
123 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| | || | ||||||||||| | ||||||||| |||||||||||||||||||| | |
|
|
| T |
19646298 |
ggaattaagctaggaagtactatgaattaagaagtaatctacgaagtactagtaactatgaagtactcttatgtttaatctttaatgttgtaatgttctg |
19646397 |
T |
|
| Q |
124 |
ttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19646398 |
ttgtctttaaattaagaagtaatctaggaagtaccggtaactttgaagtattgttatgtttttcctttcaattaggaagtaatctaagaagtggtagtaa |
19646497 |
T |
|
| Q |
224 |
ctatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttca |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19646498 |
ctatgaagtactcttatgaagtaccagtaacttatgtaatatttctatcccttaatgaagacttatgttgtgtgataattatgcttgtatttttggttca |
19646597 |
T |
|
| Q |
324 |
cttatgttg |
332 |
Q |
| |
|
||||||||| |
|
|
| T |
19646598 |
cttatgttg |
19646606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 26 - 332
Target Start/End: Original strand, 4344211 - 4344518
Alignment:
| Q |
26 |
ggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccg |
123 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| | || | ||||||||||| ||||||||||||||||||||||| ||||||| || |
|
|
| T |
4344211 |
ggaattaagctaggaagtactatgaattaagaagtaatctacgaagtactagtaactatgaagtactgttatgtttagtctttaatgtt-taatgtttcg |
4344309 |
T |
|
| Q |
124 |
ttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4344310 |
ttgtctttaaattaagaagtaatctaggaagtaccagtaactttgaagtattgttatgtttttcctttcaattaggaagtaatctaagaagtggtagtaa |
4344409 |
T |
|
| Q |
224 |
ctatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttca |
323 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
4344410 |
ctatgaagtactcttatgaagtactagtaacttatgtaatgtttctatcccttaatgaagacttatgttgtgtgataattatgcttgtattttttgttca |
4344509 |
T |
|
| Q |
324 |
cttatgttg |
332 |
Q |
| |
|
||||||||| |
|
|
| T |
4344510 |
cttatgttg |
4344518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 411 - 634
Target Start/End: Original strand, 5928350 - 5928576
Alignment:
| Q |
411 |
tatttgcaatgccatgatttcttatgtttgtggattgagacattgttgatggtttgagtagacaagtttaagcatcataatgaagcatttgccaagaatg |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5928350 |
tatttgcaatgccatgatttcttatgtttgtggattgagacattgttgatggtttgagtagacaagtttaagcatcataatgaagcatttgccaagaatg |
5928449 |
T |
|
| Q |
511 |
tattggattccttcatattcaaatgttgtaattgttttagcagtgagaataaatagatgtcctaaactcatgc---nnnnnnnnnngcgagatttatagt |
607 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5928450 |
taatggattccttcagattcaaatgttgtaattgttttagcagtgagaatagatagatgtcctaaactcatgcattttttttttttgcgagatttatagt |
5928549 |
T |
|
| Q |
608 |
tattagtattaactgatcttctatttt |
634 |
Q |
| |
|
||||||||||| ||||||||||||||| |
|
|
| T |
5928550 |
tattagtattagctgatcttctatttt |
5928576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 5928144 - 5928219
Alignment:
| Q |
340 |
gcttcggatttgttgttctcttatcctccataaactctatatttcagttttaactagttatatataagctatattt |
415 |
Q |
| |
|
||||| |||||||||| | ||||||||| |||||||||||||||||||||||| | ||| |||||||||| ||||| |
|
|
| T |
5928144 |
gcttcagatttgttgtgcacttatcctcaataaactctatatttcagttttaagtggttctatataagctctattt |
5928219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 26 - 332
Target Start/End: Original strand, 22808084 - 22808392
Alignment:
| Q |
26 |
ggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccg |
123 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||| | || | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22808084 |
ggaattaagctaggaagtactataaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtttagtctttaatgttgtaatgttccg |
22808183 |
T |
|
| Q |
124 |
ttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaa |
223 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| | |||||||||||||||||||||||||||| |||||| |
|
|
| T |
22808184 |
ttatctttaaattaagaagtaatctaggaagtactagtaactatgaagtactattatatttttcttttcaattaggaagtaatctaagaagtggtagtaa |
22808283 |
T |
|
| Q |
224 |
ctatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttca |
323 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22808284 |
ccatgaagtactcttatgaagtactagtaacttatgtaatttttttatcccttaatgaagacttatgttgtgtgataattatgctcgtatttttggttca |
22808383 |
T |
|
| Q |
324 |
cttatgttg |
332 |
Q |
| |
|
||||||||| |
|
|
| T |
22808384 |
cttatgttg |
22808392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 3e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 39 - 332
Target Start/End: Complemental strand, 23362651 - 23362369
Alignment:
| Q |
39 |
gaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaatt |
136 |
Q |
| |
|
|||||||||||||||||||||||||||| | || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23362651 |
gaagtactatgaattaagaagtaatctacgaagtactagtaactattaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaatt |
23362552 |
T |
|
| Q |
137 |
aagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactatgaagtactc |
236 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
23362551 |
aagaagtaatctaggaagtactaataactatgaagtactgttatgtttttcctttcaattaggaagtaatctaagaagtggtagtaaccatgaagtact- |
23362453 |
T |
|
| Q |
237 |
ttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttatgttg |
332 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23362452 |
------------agtaacttatgtaatgtttttatcccttaatgaagacttatgttgtgtgataattatgctcgtatttttggttcacttatgttg |
23362369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 498 - 571
Target Start/End: Complemental strand, 44174710 - 44174637
Alignment:
| Q |
498 |
tttgccaagaatgtattggattccttcatattcaaatgttgtaattgttttagcagtgagaataaatagatgtc |
571 |
Q |
| |
|
|||||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
44174710 |
tttgccaagaatgtcttggattcattcagattcaaatgttgtaattgtttaagcagtgagaatagatagatgtc |
44174637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University