View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_low_13 (Length: 600)
Name: NF12952_low_13
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 171 - 585
Target Start/End: Complemental strand, 42316339 - 42315920
Alignment:
| Q |
171 |
atgtttatatgggcacattagtgccactaagaatcata------actgatataagatgttatcattgtaatgtattttagtcaagtcaagaccctacctt |
264 |
Q |
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| T |
42316339 |
atgtttatatgggcacattaatgccaccaagaatcatatccagaactgata--agatgttatcattgtaatgtattttagtcaagtcaagaccctacctt |
42316242 |
T |
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| Q |
265 |
catattcaatttaggcctatatataactttgttcatataagatgttagaaatcatttttaacannnnnnnnnnnnn--actgaaaaacttgtaacannnn |
362 |
Q |
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| T |
42316241 |
catattcaatttaggcctatatataactttgttcatataagatgttagagatcatttctaacatttgtttttttttttactgaaaaacttgtaacatttt |
42316142 |
T |
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| Q |
363 |
nnnnnnacttgagcttcactgcaatagtactcataactctatgctttccatttgaccacaataattccccaaaaacataatccattgtagcatcaccatt |
462 |
Q |
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| T |
42316141 |
ttttt-acttgagcttcactgcaatagtactcataactctatgctttccatttgaccacaataattccccaaaaacataatccattgtagcatcaccatt |
42316043 |
T |
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| Q |
463 |
ttccattgctttcatcacaataaccttgaatgatttcttctcaccaacttccttaaagctcaagtaacttggctcaatcgaaactgaaactccatcaggt |
562 |
Q |
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| T |
42316042 |
ttccattgctttcatcacaataaccttgaatgatttcttttcaccaacttccttaaagctcaagtaacttggctcaatcgaaactgaaactccatcaggc |
42315943 |
T |
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| Q |
563 |
gccttggcttgcacgtaatatgt |
585 |
Q |
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| T |
42315942 |
gccttggcttgcacgtaatatgt |
42315920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 42316542 - 42316376
Alignment:
| Q |
4 |
gagtgagatgaaagatgtttgtttgtctctttgcattaaattggtctttgcttgttatggttttcttgtaggccatacatacacccatatatccgtatac |
103 |
Q |
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| T |
42316542 |
gagtgggatgaaagatgtttgtttgtctctttgcattaaattggtctttgcttgttatggttttcttgtaggccataca----cccatatatccgtatcc |
42316447 |
T |
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| Q |
104 |
ctttcattttgagtttgacattcttggctattatatttacctttgataactcactttggtaacgaacatgt |
174 |
Q |
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| T |
42316446 |
ctttcattttgagtttgacattcttggctattatatttacctttgataactcactttggtaacgaacatgt |
42316376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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