View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_low_14 (Length: 581)
Name: NF12952_low_14
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 88 - 371
Target Start/End: Original strand, 8445612 - 8445899
Alignment:
| Q |
88 |
atgtgtcggtatggtatgacattgttcaactatttgtaacacttattttggaacatgtcgtctttatagaaacaaataattcaaagaatattgtgaatgt |
187 |
Q |
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| T |
8445612 |
atgtgtcggtatggtctgacattgttcaactatttgtacctctcattttggaacatgtcgtctttttagaaacaaaaaattcaaagaatattgtgaatgt |
8445711 |
T |
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| Q |
188 |
ggatattgtgatgacatgagcgtatta----tagataggttatcacaattcctaaacttcatgtattggttaatgtagagagagttgttttgatgtctaa |
283 |
Q |
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| T |
8445712 |
gaatattgtgatgacatgagcatattacagatagataggttatcacaattcctaaacttcatttattgattaacgtagagaaagttgttttgatgtctaa |
8445811 |
T |
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| Q |
284 |
aggtagttttcaacttcgaaaaataaattgatataattcataacaaccaaataaatgcagtttatagagcatatagtcatgctataaa |
371 |
Q |
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| T |
8445812 |
aggtagttttcaacttcgaaaaataagttgatataattcataacaaccaaataaatgcagtttatagagcatatagtcatgctataaa |
8445899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 397 - 566
Target Start/End: Original strand, 8445895 - 8446064
Alignment:
| Q |
397 |
ataaatgaacccacatacctaaagaaacgaaagagtaacaattattacattctttctgaattagaaataagcaattattacattacatgaaacctcgtaa |
496 |
Q |
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| T |
8445895 |
ataaatgaacccacatacctaaagaaacgaaagagtaacaattattacattctttctgaattagaaaaaagcaattattacattacatgaaacctcgtaa |
8445994 |
T |
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| Q |
497 |
tcacaaacatcgtatgaaacttgttaatattgaaattttaatagaagatagggtaaaatagtacacatat |
566 |
Q |
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| T |
8445995 |
tcacaaacatcgtatgaaactcgttaatattgaaattttaatagaagatagggtaaaatagtactcatat |
8446064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 8446652 - 8446719
Alignment:
| Q |
39 |
gattctaggacgacaaaggcagtgaatctaataacattttctaaatcaaatgtgtcggtatggtatga |
106 |
Q |
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| T |
8446652 |
gattctaggatgacaaagggagtgaacctaataacattttctatctcaaatgtgttgttatggaatga |
8446719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 493 - 566
Target Start/End: Original strand, 8404358 - 8404431
Alignment:
| Q |
493 |
gtaatcacaaacatcgtatgaaacttgttaatattgaaattttaatagaagatagggtaaaatagtacacatat |
566 |
Q |
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| T |
8404358 |
gtaatcataaacatcgtatgaaactcattaatattacaattttaatataagacagggtaagatggtactcatat |
8404431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 32459067 - 32459110
Alignment:
| Q |
39 |
gattctaggacgacaaaggcagtgaatctaataacattttctaa |
82 |
Q |
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| T |
32459067 |
gattctaggatgataaaggcagtgaatccaataacattttctaa |
32459110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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