View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_low_16 (Length: 552)
Name: NF12952_low_16
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Complemental strand, 46909961 - 46909410
Alignment:
| Q |
1 |
ctgatgatttgctagggattctccctcacaatgatcctcttcttaagaaatgtatagatcctatggatgctttggctaggtcaattataaattgggcaga |
100 |
Q |
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| T |
46909961 |
ctgatgatttgctagggattctccctcacaatgatcctcttcttaagaaatgtatagatcctatggatgctttggctaggtcaattataaattgggcaga |
46909862 |
T |
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| Q |
101 |
aacaacagcaaaggtacctgggagattttagttttcattttttctatttctctccaaaatcttggcattataattggagcgctcatgtgnnnnnnngcag |
200 |
Q |
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| T |
46909861 |
aacaacagcaaaggtacctgggagattttagttttcattttttctatttctctccaaaatcttggcattataattggagcactcatgtaaaaaaaagcag |
46909762 |
T |
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| Q |
201 |
ctccatgtgaatggacccaaatactttccaatacatatatctctcaattcctctctttctctccatcatctatccatcctcaaattcggatcctctgcag |
300 |
Q |
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| T |
46909761 |
ctccatgtgaatggactcaaatactttccaatacatatatctctcaattcctctctttccctccatcatctatccatcctcaaattcggatcctctgcag |
46909662 |
T |
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| Q |
301 |
ctggctttatggtgtagcctgtctatggttattctatatgaaagtgttgcagatttaaggattgattttatttgttacctagtcatgtttagtttttact |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46909661 |
ctggctttatggtgtagcctgtctatggttattctatatgaaagtgttgcagatttaaggattgattttatttgttacctagtcatgtttagtttttact |
46909562 |
T |
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| Q |
401 |
tatctgttgttactctaatgagagttaagttagttgtttagcctatcagttagtattattttacttctgtgtttttctgttaggtagttagggtcgttat |
500 |
Q |
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| T |
46909561 |
tatctgttgttactctaatgagagttaagttagttgtttagcctatcagttagtattattttacttctgtgtttttctgttaggtagttagggtggttat |
46909462 |
T |
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| Q |
501 |
ccacctcttcactcttgtatatgtatattcacttttccattcattcaatgaa |
552 |
Q |
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| T |
46909461 |
ccacctcttcactcttgtatatgtatattcacttttccattcattcaatgaa |
46909410 |
T |
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