View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_low_17 (Length: 542)
Name: NF12952_low_17
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_low_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 9 - 542
Target Start/End: Complemental strand, 40171387 - 40170852
Alignment:
| Q |
9 |
acatcatcattgtgaatatattcaaattccggagtcctcagagaatcgctggttgacatgctctcatccagtgaaccggaaccgctgaaggaattacttg |
108 |
Q |
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| T |
40171387 |
acatcgtcattccgaatatattcaaattctggagtcatcagagaatcgctggttgacatgctctcatccagtgaagcagaaccgctgaaggaattacttg |
40171288 |
T |
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| Q |
109 |
ggtaaatgtccatccatctcggactacagaccacactcttaaaatcgggacaaacagcaccatcattgcttggagcaatgaatgctttaactccagtctt |
208 |
Q |
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| T |
40171287 |
ggtaaatgtccatccatctcggactacagaccacactcttaaaatctggacaaacagcaccatcattgcttggagcaatgaatgctttaactccagtctt |
40171188 |
T |
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| Q |
209 |
aatttgactagctttggtcgaacatgcctctttggagagcagaaatccactcgattttactctcgatgagggttgcaaaatgttctcggacataacattt |
308 |
Q |
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| T |
40171187 |
aatttgactagctttggtcgaacatgcctctttggagaccagaaatccactcgatcttattctcgatgagggttgcaaaatgttctcggacataacattt |
40171088 |
T |
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| Q |
309 |
ttctgtgaactcgcaacagaatccttttttgtctttgcggttttggacacgcatggaaccttcaagtaacaaaaacagtcctattaaagtacataaaatt |
408 |
Q |
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| T |
40171087 |
ttctgcgaacttgcaatggaatccttctttgtctttgcagttttggacgcacatggaaccttcaagtaacaaaaacagtcctattaaagtacataaaatt |
40170988 |
T |
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| Q |
409 |
aggacatacatgcacgaattaggatttaagttgtatatcccgatggtgtaaataaattttacacatacatctaattatattcaatcattctactactgta |
508 |
Q |
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| T |
40170987 |
tgcacatacatgcacgaattaggatttaagttgtatatcccaatggtgtaaataaaatttacaaatgcatctaattatattcaatcattctactacttta |
40170888 |
T |
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| Q |
509 |
tgatgtgc--attccaaaaatatctcctcaaatatc |
542 |
Q |
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| T |
40170887 |
ttatgtgcatattcctaaaatatctcctcaaatatc |
40170852 |
T |
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