View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_low_18 (Length: 502)
Name: NF12952_low_18
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 30186939 - 30186671
Alignment:
| Q |
16 |
atgaaacaaggaagttcacctgaatccaagtgatttgaaaattattaacacggaaagcactgaaaggtgtattatatcgaattgggtacaacatgcatgc |
115 |
Q |
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| T |
30186939 |
atgaaacaaggaagttcacctgaatccaagtgattagaaaattattaacacggaaagcactgaaagatgtattatatcgaattgggtacaacatgcatgc |
30186840 |
T |
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| Q |
116 |
atgcactagctagctgtatgatgatttgtttaatcacatgagtttttgttgggaagtttagaaaggaagggaagggagtgatttgaagataaagtgagga |
215 |
Q |
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| T |
30186839 |
atgcactagctagctgtatgatgatttgtttaatcacatgagtttttgttgggaagtttagaaaggaagggaagggagtgatttgaagataaagtgagga |
30186740 |
T |
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| Q |
216 |
ggactgaacgtactagcgtagtctccgacctccagcatggaggaactcaaagatgtattggagaatgac |
284 |
Q |
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| T |
30186739 |
ggactgaacgtactagcgtagtctccgacctccaacatggaggaactcaaagatgtattggagaatgac |
30186671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 284 - 481
Target Start/End: Complemental strand, 30186723 - 30186526
Alignment:
| Q |
284 |
cgtagtctccgacctccaacatggaggaactaaaagatgtataggagaatgacttttgaggtttttggagggctttgaattaatttcaagattcttttcc |
383 |
Q |
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| T |
30186723 |
cgtagtctccgacctccaacatggaggaactcaaagatgtattggagaatgacttttgagatttttggagggctttgaattaatttcaagattctttccc |
30186624 |
T |
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| Q |
384 |
tctataataatcatctcaaaataaaggaaatatcattcataagtattatctttctttcccctccaaaaatactctcaaataatgcgagggattcccct |
481 |
Q |
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| T |
30186623 |
tctataataatcatctcaaaataaaggaaatatcattcataagtattatctttctttcccctccaaaaatactctcaaataatgcgagggattcccct |
30186526 |
T |
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